Evidence map›Paper›PMID 23275880›Full record

ArticleG3 (Bethesda, Md.)2012

Mapping six new susceptibility to colon cancer (Scc) loci using a mouse interspecific backcross.

Chevonne D Eversley, Xie Yuying, R Scott Pearsall, David W Threadgill

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Sex disparity in colonic adenomagenesis involves promotion by male hormones, not protection by female hormones.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Chevonne D EversleyDepartment of Genetics, Center for Gastrointestinal Biology and Disease, and Lineberger Cancer Center, University of North Carolina, Chapel Hill, North Carolina 27599, USA.
Xie Yuying
R Scott Pearsall
David W Threadgill
UNC Lineberger Comprehensive Cancer CenterUniversity of North Carolina at Chapel Hill · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
PILOT AND FEASIBILITY STUDIESP30DK034987 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ROBERT S. SANDLER · 1985 to 2026
$30.5M
TISSUE PROCUREMENT &ANALYSISP50CA106991 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI TEPPER, JOEL E · 2004 to 2009
$12.1M
Modeling heterogeneity for safe cancer prevention and detectionU01CA105417 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI THREADGILL, DAVID W. · 2004 to 2013
$6.7M
ERBB receptors in normal and cancerous colon biologyR01CA092479 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI THREADGILL, DAVID W. · 2001 to 2012
$2.8M
Genetic control of colorectal cancer histopathologyR01CA079869 · NCI · VANDERBILT UNIVERSITY · PI THREADGILL, DAVID W. · 1999 to 2013
$2.7M
Minority Predoctoral Fellowship ProgramF31CA123636 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI EVERSLEY, CHEVONNE D · 2007 to 2008
$53k
NCI NIH HHS CA016086NCI NIH HHS CA079869NCI NIH HHS CA-092479NCI NIH HHS CA105417NCI NIH HHS CA106991NCI NIH HHS CA123636NCI NIH HHS F31 CA123636NCI NIH HHS P30 CA016086NCI NIH HHS P50 CA106991NCI NIH HHS R01 CA079869NCI NIH HHS R01 CA092479NCI NIH HHS U01 CA105417NIDDK NIH HHS DK034987NIDDK NIH HHS P30 DK034987
6 · The paper itself

Abstract

Colorectal cancer (CRC) has a complex etiology resulting from the combination of multiple genetic and environmental factors, each with small effects. Interactions among susceptibility modifier loci make many of the loci difficult to detect in human genome-wide association studies. Previous analyses in mice have used classical inbred strains, which share large portions of their genomes due to common ancestry. Herein, we used an interspecific backcross between the Mus musculus strain A/J and the Mus spretus strain SPRET/EiJ to map 6 additional CRC modifier loci (Scc16-21) and 2 suggestive loci. Three loci modify the location of tumors along the proximal-distal axis of the colon. Six CRC modifiers previously mapped in intraspecific crosses were also replicated. This work confirms genetic models suggesting that CRC is caused by many small effect alleles and brings the catalog of reported CRC modifier loci to 23 spread across 13 chromosomes. Furthermore, this work provides the foundation for large population-level epistatic interaction tests to identify combinations of low effect alleles that may have large effects on CRC susceptibility.

Indexed as

Chromosome MappingGenetic Predisposition to DiseaseAllelesAnimalsChromosomesColonic NeoplasmsCrosses, GeneticGenomeGenotypeMicePhenotypeQuantitative Trait Locicancer modifiercolorectal cancerspretus

Identifiers

PMID23275880
PMCPMC3516479
OpenAlexW2141771429

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.