ArticleGenome biology and evolution2013
Reconstructing the evolutionary history of transposable elements.
Article in Genome biology and evolution, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed.
- Genomic and evolutionary analysis reveals dynamic variations of MKK3 gene, a key regulator for seed dormancy in barley.The plant genome · 2026Article
- Tracking Down the Evolution of Microorganisms by Exhaustive Bottom-Up Analysis of Proteomes.International journal of molecular sciences · 2025Article
- Patterns of piRNA Regulation in Drosophila Revealed through Transposable Element Clade Inference.Molecular biology and evolution · 2022Article
- The effect of hybridization on transposable element accumulation in an undomesticated fungal species.eLife · 2020Article
- Multi-faceted analysis provides little evidence for recurrent whole-genome duplications during hexapod evolution.BMC biology · 2020Article
- Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes.Mobile DNA · 2019Article
- Impact of transposable elements on genome structure and evolution in bread wheat.Genome biology · 2018Article
- Squamate reptiles challenge paradigms of genomic repeat element evolution set by birds and mammals.Nature communications · 2018Article
- Characterization of irritans mariner-like elements in the olive fruit fly Bactrocera oleae (Diptera: Tephritidae): evolutionary implications.Die Naturwissenschaften · 2016Article
- Reconstructing the evolutionary history of gypsy retrotransposons in the Périgord black truffle (Tuber melanosporum Vittad.).Mycorrhiza · 2016Article
- Real-time transposable element activity in individual live cells.Proceedings of the National Academy of Sciences of the United States of America · 2016Article
- VHICA, a New Method to Discriminate between Vertical and Horizontal Transposon Transfer: Application to the Mariner Family within Drosophila.Molecular biology and evolution · 2016Article
- Mariner transposons are sailing in the genome of the blood-sucking bug Rhodnius prolixus.BMC genomics · 2015Article
- Evolutionary dynamics of hAT DNA transposon families in Saccharomycetaceae.Genome biology and evolution · 2014Article
- Genomic landscape and evolutionary dynamics of mariner transposable elements within the Drosophila genus.BMC genomics · 2014Article
- A new genome-wide method to track horizontally transferred sequences: application to Drosophila.Genome biology and evolution · 2014Article
- Virus-like attachment sites and plastic CpG islands:landmarks of diversity in plant Del retrotransposons.PloS one · 2014Article
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The impact of transposable elements (TEs) on genome structure, plasticity, and evolution is still not well understood. The recent availability of complete genome sequences makes it possible to get new insights on the evolutionary dynamics of TEs from the phylogenetic analysis of their multiple copies in a wide range of species. However, this source of information is not always fully exploited. Here, we show how the history of transposition activity may be qualitatively and quantitatively reconstructed by considering the distribution of transposition events in the phylogenetic tree, along with the tree topology. Using statistical models developed to infer speciation and extinction rates in species phylogenies, we demonstrate that it is possible to estimate the past transposition rate of a TE family, as well as how this rate varies with time. This methodological framework may not only facilitate the interpretation of genomic data, but also serve as a basis to develop new theoretical and statistical models.
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