Evidence map›Paper›PMID 23275348›Full record

ArticleThe Journal of biological chemistry2013

The naphthoquinone diospyrin is an inhibitor of DNA gyrase with a novel mechanism of action.

Shantanu Karkare, Terence T H Chung, Frederic Collin, Lesley A Mitchenall, Adam R McKay, Sandra J Greive, Jacobus J M Meyer, Namrita Lall, Anthony Maxwell

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
  3. Bakuchiol killsFrontiers in pharmacology · 2025
    Article
  4. Review
  5. The GenusPlants (Basel, Switzerland) · 2023
    Review
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  9. Article
  10. Reverse vaccinology and subtractive genomics approaches for identifying common therapeutics againstThe journal of venomous animals and toxins including tropical diseases · 2021
    Article
  11. Review
  12. The pentapeptide-repeat protein, MfpA, interacts with mycobacterial DNA gyrase as a DNA T-segment mimic.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Shantanu KarkareDepartment of Biological Chemistry, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom.
Terence T H Chung
Frederic Collin
Lesley A Mitchenall
Adam R McKay
Sandra J Greive
Jacobus J M Meyer
Namrita Lall
Anthony Maxwell
John Innes Centre · GBUniversity of Pretoria · ZANorwich Research Park · GBUniversity College London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J004561/1Biotechnology and Biological Sciences Research Council BBS/E/J/00000201
6 · The paper itself

Abstract

Tuberculosis and other bacterial diseases represent a significant threat to human health. The DNA topoisomerases are excellent targets for chemotherapy, and DNA gyrase in particular is a well-validated target for antibacterial agents. Naphthoquinones (e.g. diospyrin and 7-methyljuglone) have been shown to have therapeutic potential, particularly against Mycobacterium tuberculosis. We have found that these compounds are inhibitors of the supercoiling reaction catalyzed by M. tuberculosis gyrase and other gyrases. Our evidence strongly suggests that the compounds bind to the N-terminal domain of GyrB, which contains the ATPase active site, but are not competitive inhibitors of the ATPase reaction. We propose that naphthoquinones bind to GyrB at a novel site close to the ATPase site. This novel mode of action could be exploited to develop new antibacterial agents.

Indexed as

Adenosine TriphosphateAnti-Infective AgentsBinding SitesCatalytic DomainDNADNA GyraseEscherichia coliHumansInhibitory Concentration 50Mass SpectrometryModels, ChemicalMycobacterium tuberculosisNaphthoquinonesProtein BindingProtein Structure, TertiaryStaphylococcus aureusAdenosine TriphosphateAnti-Infective AgentsdiospyrinDNADNA GyraseNaphthoquinones

Identifiers

PMID23275348
PMCPMC3576119
OpenAlexW2138215744

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.