Evidence map›Paper›PMID 23274426›Full record

ArticleJournal of the American Society of Nephrology : JASN2013

DGKE variants cause a glomerular microangiopathy that mimics membranoproliferative GN.

Fatih Ozaltin, Binghua Li, Alysha Rauhauser, Sung-Wan An, Oguz Soylemezoglu, Ipek Isik Gonul, Ekim Z Taskiran, Tulin Ibsirlioglu, Emine Korkmaz, Yelda Bilginer and 23 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed, 1 pooled it
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 1 synthesis or guideline pooled it, 141 citations in OpenAlex.

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  14. Hemolytic Uremic Syndrome in Children.Turkish archives of pediatrics · 2021
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13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors at 4 institutions in 2 countries.

Fatih OzaltinDepartment of Pediatric Nephrology, Hacettepe University Faculty of Medicine, Ankara, Turkey.
Binghua Li
Alysha Rauhauser
Sung-Wan An
Oguz Soylemezoglu
Ipek Isik Gonul
Ekim Z Taskiran
Tulin Ibsirlioglu
Emine Korkmaz
Yelda Bilginer
Ali Duzova
Seza Ozen
Rezan Topaloglu
Nesrin Besbas
Shazia Ashraf
Yong Du
Chaoying Liang
Phylip Chen
Dongmei Lu
Komal Vadnagara
Susan Arbuckle
Deborah Lewis
Benjamin Wakeland
Richard J Quigg
Richard F Ransom
Edward K Wakeland
Matthew K Topham
Nicolas G Bazan
Chandra Mohan
Friedhelm Hildebrandt
Aysin Bakkaloglu
Chou-Long Huang
Massimo Attanasio
Center for Rheumatology · USHacettepe University · TRGazi University · TRThe University of Texas Southwestern Medical Center · US

Funding

UT Southwestern O'Brien Kidney Research Core CenterP30DK079328 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI MOE, ORSON W · 2007 to 2021
$16.9M
Diacylglycerol Kinase Delta in Growth and DevelopmentR01CA095463 · NCI · UNIVERSITY OF UTAH · PI TOPHAM, MATTHEW KENT · 2002 to 2011
$2.4M
Role of GLIS2 in the Development of Cystic Kidney DiseaseR01DK090326 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI ATTANASIO, MASSIMO · 2012 to 2016
$1.7M
Regulation of renal calcium transportR01DK085726 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI HUANG, CHOU-LONG · 2010 to 2014
$1.7M
Howard Hughes Medical InstituteNCI NIH HHS CA095463NCI NIH HHS R01 CA095463NIDDK NIH HHS 1R01DK090326-01A1NIDDK NIH HHS DK1068306NIDDK NIH HHS DK1069274NIDDK NIH HHS DK85726NIDDK NIH HHS P30 DK079328NIDDK NIH HHS P30DK079328-04NIDDK NIH HHS P30DK79328NIDDK NIH HHS R01 DK085726NIDDK NIH HHS R01 DK090326NIDDK NIH HHS RC4-DK090947
6 · The paper itself

Abstract

Renal microangiopathies and membranoproliferative GN (MPGN) can manifest similar clinical presentations and histology, suggesting the possibility of a common underlying mechanism in some cases. Here, we performed homozygosity mapping and whole exome sequencing in a Turkish consanguineous family and identified DGKE gene variants as the cause of a membranoproliferative-like glomerular microangiopathy. Furthermore, we identified two additional DGKE variants in a cohort of 142 unrelated patients diagnosed with membranoproliferative GN. This gene encodes the diacylglycerol kinase DGKε, which is an intracellular lipid kinase that phosphorylates diacylglycerol to phosphatidic acid. Immunofluorescence confocal microscopy demonstrated that mouse and rat Dgkε colocalizes with the podocyte marker WT1 but not with the endothelial marker CD31. Patch-clamp experiments in human embryonic kidney (HEK293) cells showed that DGKε variants affect the intracellular concentration of diacylglycerol. Taken together, these results not only identify a genetic cause of a glomerular microangiopathy but also suggest that the phosphatidylinositol cycle, which requires DGKE, is critical to the normal function of podocytes.

Indexed as

MutationAmino Acid SequenceAnimalsBase SequenceCohort StudiesConsanguinityDiacylglycerol KinaseDiagnosis, DifferentialDiglyceridesDNAFemaleGenetic VariationGlomerulonephritis, MembranoproliferativeHEK293 CellsHumansKidney DiseasesDGKE protein, humanDiacylglycerol KinaseDiglyceridesDNA

Identifiers

PMID23274426
PMCPMC3582208
OpenAlexW2159986581

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.