Evidence map›Paper›PMID 23273979›Full record

ArticleMolecular cell2013

Conserved bacterial RNase YbeY plays key roles in 70S ribosome quality control and 16S rRNA maturation.

Asha Ivy Jacob, Caroline Köhrer, Bryan William Davies, Uttam Lal RajBhandary, Graham Charles Walker

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 141 citations in OpenAlex.

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  15. Crystal Structure of the Metallo-Endoribonuclease YbeY fromJournal of microbiology and biotechnology · 2023
    Article
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27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Asha Ivy JacobDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Caroline Köhrer
Bryan William Davies
Uttam Lal RajBhandary
Graham Charles Walker
Massachusetts Institute of Technology · USHarvard University · US

Funding

TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ESSIGMANN, JOHN M · 1985 to 2020
$25.6M
MOLEULAR GENETICS OF RHIZOBIUM PLASMIDSR01GM031030 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WALKER, GRAHAM C · 1985 to 2020
$8.6M
STRUCTURE/FUNCTION OF TRANSFER RIBONUCLEIC ACIDSR37GM017151 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI RAJBHANDARY, UTTAM L · 1997 to 2006
$3.6M
STRUCTURE &FUNCTION OF TRANSFER RIBONUCLEIC ACIDSR01GM017151 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI RAJBHANDARY, UTTAM L · 1985 to 2015
$2.4M
Structure and Function of Transfer Ribonucleic AcidsR56GM017151 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI RAJBHANDARY, UTTAM L · 2009 to 2009
$559k
CHARACTERIZING THE CELL CYCLE REGULATION OF MCM3F32GM017151 · NIGMS · CORNELL UNIVERSITY ITHACA · PI YOUNG, MICHAEL R · 1994 to 1995
–
NIEHS NIH HHS P30 ES002109NIGMS NIH HHS F32 GM017151NIGMS NIH HHS GM17151NIGMS NIH HHS GM31030NIGMS NIH HHS R01 GM017151NIGMS NIH HHS R01 GM031030NIGMS NIH HHS R37 GM017151NIGMS NIH HHS R56 GM017151
6 · The paper itself

Abstract

Quality control of ribosomes is critical for cellular function since protein mistranslation leads to severe physiological consequences. We report evidence of a previously unrecognized ribosome quality control system in bacteria that operates at the level of 70S to remove defective ribosomes. YbeY, a previously unidentified endoribonuclease, and the exonuclease RNase R act together by a process mediated specifically by the 30S ribosomal subunit, to degrade defective 70S ribosomes but not properly matured 70S ribosomes or individual subunits. Furthermore, there is essentially no fully matured 16S rRNA in a ΔybeY mutant at 45°C, making YbeY the only endoribonuclease to be implicated in the critically important processing of the 16S rRNA 3' terminus. These key roles in ribosome quality control and maturation indicate why YbeY is a member of the minimal bacterial gene set and suggest that it could be a potential target for antibacterial drugs.

Indexed as

Conserved SequenceRNA Processing, Post-TranscriptionalArginineBase SequenceEscherichia coliEscherichia coli ProteinsExoribonucleasesHistidineHot TemperatureMetalloproteinsMetalsModels, BiologicalMolecular Sequence DataMutationProtein BiosynthesisRibosomesArginineEscherichia coli ProteinsExoribonucleasesHistidineMetalloproteinsMetalsribonuclease RRNA, Ribosomal, 16SYbeY protein, E coli

Identifiers

PMID23273979
PMCPMC3570609
OpenAlexW2038752430

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.