Evidence map›Paper›PMID 23273601›Full record

Trial reportNeurobiology of aging2013

Synaptic genes are extensively downregulated across multiple brain regions in normal human aging and Alzheimer's disease.

Nicole C Berchtold, Paul D Coleman, David H Cribbs, Joseph Rogers, Daniel L Gillen, Carl W Cotman

Open access · greenAbstract readRandomized Controlled Trial
In one paragraph

Trial report in Neurobiology of aging, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 198 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
198citing papers in PubMed, 8 pooled it
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

198 citing papers in PubMed, 8 syntheses or guidelines pooled it, 307 citations in OpenAlex.

  1. Meta-Analysis of Transcriptomic Studies of Blood and Six Brain Regions Identifies a Consensus of 15 Cross-Tissue Mechanisms in Alzheimer's Disease and Suggests an Origin of Cross-Study Heterogeneity.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2025
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  6. A Meta-Analysis of Alzheimer's Disease Brain Transcriptomic Data.Journal of Alzheimer's disease : JAD · 2019
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  9. Metabolic Shifts Precede Cognitive Decline in the Male hAß-KI Alzheimer's Mouse Model.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
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  19. Decoding Alzheimer's Disease One Cell Class at a Time.Cellular and molecular neurobiology · 2026
    Review
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138 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Nicole C BerchtoldInstitute for Mental Impairments and Neurological Disorders (MIND), University of California Irvine, Irvine, CA, USA. nberchto@uci.edu
Paul D Coleman
David H Cribbs
Joseph Rogers
Daniel L Gillen
Carl W Cotman
University of California, Irvine · USBanner Sun Health Research Institute · USUniversity of Rochester Medical Center · US

Funding

UC Irvine Alzheimer's Disease Research Center Induced Pluripotent Stem Cell CoreP50AG016573 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI LAFERLA, FRANK M · 2000 to 2019
$37.0M
TISSUE REPOSITORY COREP01AG000538 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI LAFERLA, FRANK M · 1985 to 2018
$24.8M
PRESENCE AND ROLE OF IMMUNE MARKERS IN ALZHEIMER'S BRAINR01AG007367 · NIA · SUN HEALTH RESEARCH INSTITUTE · PI ROGERS, JOSEPH B · 1988 to 2014
$3.3M
Brain Aging &Gene Expression Patterns Using MicroarraysR01AG023173 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI COTMAN, CARL WAYNE · 2003 to 2007
$2.5M
DNA methylation in Alzheimer?s disease and normally aged brainR01AG036400 · NIA · BANNER SUN HEALTH RESEARCH INSTITUTE · PI COLEMAN, PAUL D · 2009 to 2013
$2.0M
Gene Expression, Compensation Mechanisms, and Successful Cognitive AgingR01AG034667 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI COTMAN, CARL WAYNE · 2009 to 2013
$1.7M
Alzheimer's disease: a blood diagnostic and biomarker of disease progressionR56AG007367 · NIA · BANNER SUN HEALTH RESEARCH INSTITUTE · PI ROGERS, JOSEPH B · 2010 to 2011
$594k
NIA NIH HHS AG00538NIA NIH HHS AG34667NIA NIH HHS AG7367NIA NIH HHS P01 AG000538NIA NIH HHS P50 AG016573NIA NIH HHS P50 AG16573NIA NIH HHS R01 AG007367NIA NIH HHS R01 AG023173NIA NIH HHS R01 AG034667NIA NIH HHS R01 AG036400NIA NIH HHS R01 AG23173NIA NIH HHS R01 AG36400NIA NIH HHS R56 AG007367
6 · The paper itself

Abstract

Synapses are essential for transmitting, processing, and storing information, all of which decline in aging and Alzheimer's disease (AD). Because synapse loss only partially accounts for the cognitive declines seen in aging and AD, we hypothesized that existing synapses might undergo molecular changes that reduce their functional capacity. Microarrays were used to evaluate expression profiles of 340 synaptic genes in aging (20-99 years) and AD across 4 brain regions from 81 cases. The analysis revealed an unexpectedly large number of significant expression changes in synapse-related genes in aging, with many undergoing progressive downregulation across aging and AD. Functional classification of the genes showing altered expression revealed that multiple aspects of synaptic function are affected, notably synaptic vesicle trafficking and release, neurotransmitter receptors and receptor trafficking, postsynaptic density scaffolding, cell adhesion regulating synaptic stability, and neuromodulatory systems. The widespread declines in synaptic gene expression in normal aging suggests that function of existing synapses might be impaired, and that a common set of synaptic genes are vulnerable to change in aging and AD.

Indexed as

Gene Expression ProfilingAdultAgedAged, 80 and overAgingAlzheimer DiseaseBrain ChemistryDown-RegulationFemaleHumansMaleMiddle AgedSynapsesSynaptic VesiclesYoung Adult

Identifiers

PMID23273601
PMCPMC4022280
OpenAlexW2061116800

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.