Evidence map›Paper›PMID 23273563›Full record

ArticleLung cancer (Amsterdam, Netherlands)2013

Gene silencing of SLC5A8 identified by genome-wide methylation profiling in lung cancer.

Jong Y Park, Donghwa Kim, Mihi Yang, Hyun Y Park, Sang Haak Lee, Maria Rincon, Jenny Kreahling, Christoph Plass, Dominic J Smiraglia, Melvyn S Tockman and 1 more

Abstract read
In one paragraph

Article in Lung cancer (Amsterdam, Netherlands), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

  1. Trial
  2. Article
  3. The Epigenetic Modification ofIranian journal of public health · 2022
    Article
  4. Review
  5. Article
  6. Review
  7. Significant association ofOncology letters · 2019
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Downregulation of SLC5A8 inhibits hepatocellular carcinoma progression through regulation of Wnt/β-catenin signaling.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
  13. Frontiers in cellular and infection microbiology · 2016
    Article
  14. Article
  15. Epigenetic therapy in lung cancer.Frontiers in oncology · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Jong Y ParkDepartment of Cancer Epidemiology, Moffitt Cancer Center, Tampa, FL, United States.
Donghwa Kim
Mihi Yang
Hyun Y Park
Sang Haak Lee
Maria Rincon
Jenny Kreahling
Christoph Plass
Dominic J Smiraglia
Melvyn S Tockman
Seung Joon Kim
Moffitt Cancer Center · USCatholic University of Korea · KRThe Ohio State University · USSookmyung Women's University · KR

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI KENNETH Lynn WRIGHT · 1998 to 2026
$93.5M
Epigenetic Markers for Lung Cancer DetectionR03CA114713 · NCI · H. LEE MOFFITT CANCER CTR &RES INST · PI PARK, JONG Y · 2005 to 2006
$161k
NCI NIH HHS P30 CA076292NCI NIH HHS R03 CA114713NCI NIH HHS R03CA114713
6 · The paper itself

Abstract

backgroundAberrant DNA hypermethylation has been implicated as a component of an epigenetic mechanism that silences genes in cancers.

methodsWe performed a genome-wide search to identify differentially methylated loci between 26 tumor and adjacent non-tumor paired tissues from same lung cancer patients using restriction landmark genomic scanning (RLGS) analysis. Among 229 loci which were hypermethylated in lung tumors as compared to adjacent non-tumor tissues, solute carrier family 5, member 8 (SLC5A8) was one of the hypermethylated genes, and known as a tumor suppressor gene which is silenced by epigenetic changes in various tumors. We investigated the significance of DNA methylation in SLC5A8 expression in lung cancer cell lines, and 23 paired tumor and adjacent non-tumor lung tissues by reverse transcription-PCR (RT-PCR), quantitative methylation specific PCR (QMSP) and bisulfite modified DNA sequencing analyses.

resultsReduced or lost expression of SLC5A8 was observed in 39.1% (9/23) of the tumor tissues as compared with paired adjacent non-tumor tissues. Bisulfite sequencing results of lung cancer cell lines and tissues which did not express SLC5A8 showed a densely methylated promoter region of SLC5A8. SLC5A8 was reactivated by treatment with DNA methyltransferase inhibitor, 5-Aza and/or HDAC inhibitor, trichostatin A (TSA) in lung cancer cell lines, which did not express SLC5A8. Hypermethylation was detected at the promoter region of SLC5A8 in primary lung tumor tissues as compared with adjacent non-tumor tissues (14/23, 60.9%).

conclusionThese results suggest that DNA methylation in the SLC5A8 promoter region may suppress the expression of SLC5A8 in lung tumor.

Indexed as

DNA MethylationGene Expression Regulation, NeoplasticGene SilencingSuppression, GeneticCation Transport ProteinsCell Line, TumorFemaleGenome-Wide Association StudyHumansLung NeoplasmsMaleMonocarboxylic Acid TransportersPromoter Regions, GeneticCation Transport ProteinsMonocarboxylic Acid TransportersSLC5A8 protein, human

Identifiers

PMID23273563
PMCPMC3566332
OpenAlexW1985706014

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.