Evidence map›Paper›PMID 23273517›Full record

ArticleBioorganic & medicinal chemistry letters2013

Synthesis and biological evaluation of analogues of the kinase inhibitor nilotinib as Abl and Kit inhibitors.

Damien Y Duveau, Xin Hu, Martin J Walsh, Suneet Shukla, Amanda P Skoumbourdis, Matthew B Boxer, Suresh V Ambudkar, Min Shen, Craig J Thomas

Abstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Exploring the Impact of Protein Chain Selection in Binding Energy Calculations with DFT.Chemphyschem : a European journal of chemical physics and physical chemistry · 2024
    Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Damien Y DuveauNational Center for Advancing Translational Sciences, National Institutes of Health, Bethesda, MD 20892, USA.
Xin Hu
Martin J Walsh
Suneet Shukla
Amanda P Skoumbourdis
Matthew B Boxer
Suresh V Ambudkar
Min Shen
Craig J Thomas

Funding

Therapeutics for Rare and Neglected Diseases - ScienceZIBTR000002 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI MCKEW, JOHN · 2012 to 2014
$77.2M
Sanford-Burnham Center for Chemical GenomicsU54HG005033 · NHGRI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI JACKSON, MICHAEL · 2008 to 2012
$72.5M
NIH Chemical Genomics CenterZIBHG200319 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI AUSTIN, CHRISTOPHER P · 2010 to 2011
$55.9M
Biochemical Analysis of Multidrug Resistance-linked Transport ProteinsZIABC010030 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI AMBUDKAR, SURESH · 2009 to 2025
$21.6M
Intramural NIH HHS ZIB HG200319NHGRI NIH HHS U54 HG005033NHGRI NIH HHS U54HG005033
6 · The paper itself

Abstract

The importance of the trifluoromethyl group in the polypharmacological profile of nilotinib was investigated. Molecular editing of nilotinib led to the design, synthesis and biological evaluation of analogues where the trifluoromethyl group was replaced by a proton, fluorine and a methyl group. While these analogues were less active than nilotinib toward Abl, their activity toward Kit was comparable, with the monofluorinated analogue being the most active. Docking of nilotinib and of analogues 2a-c to the binding pocket of Abl and of Kit showed that the lack of shape complementarity in Kit is compensated by the stabilizing effect from its juxtamembrane region.

Indexed as

Catalytic DomainDrug DesignEnzyme ActivationFluorineMethaneModels, MolecularMolecular StructureOncogene Proteins v-ablProtein Kinase InhibitorsProtein-Tyrosine KinasesProto-Oncogene Proteins c-kitPyrimidinesFluorineMethanenilotinibOncogene Proteins v-ablProtein Kinase InhibitorsProtein-Tyrosine KinasesProto-Oncogene Proteins c-kitPyrimidines

Identifiers

PMID23273517
PMCPMC3547291

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.