Evidence map›Paper›PMID 23273016›Full record

ArticleBiology direct2012

Detection of a common chimeric transcript between human chromosomes 7 and 16.

Wenwen Fang, Yong Wei, Yibin Kang, Laura F Landweber

Abstract read
In one paragraph

Article in Biology direct, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. The Fusion ofInternational journal of molecular sciences · 2021
    Article
  2. Review
  3. Trans-spliced long non-coding RNA: an emerging regulator of pluripotency.Cellular and molecular life sciences : CMLS · 2018
    Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Wenwen FangDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544, USA.
Yong Wei
Yibin Kang
Laura F Landweber

Funding

UNDERSTANDING COMPLEX GENE EDITING SYSTEMS IN PROTISTSR01GM059708 · NIGMS · PRINCETON UNIVERSITY · PI LANDWEBER, LAURA F · 1999 to 2016
$4.4M
Metadherin in Metastasis and Chemoresistance of Breast CancerR01CA134519 · NCI · PRINCETON UNIVERSITY · PI KANG, YIBIN · 2008 to 2012
$1.6M
The Role of miRNAs in Epithelial-Mesenchymal Transition and MetastasisR01CA141062 · NCI · PRINCETON UNIVERSITY · PI KANG, YIBIN · 2010 to 2014
$1.6M
NCI NIH HHS R01CA134519NCI NIH HHS R01CA141062NIGMS NIH HHS GM59708
6 · The paper itself

Abstract

Interchromosomal chimeric RNA molecules are often transcription products from genomic rearrangement in cancerous cells. Here we report the computational detection of an interchromosomal RNA fusion between ZC3HAV1L and CHMP1A from RNA-seq data of normal human mammary epithelial cells, and experimental confirmation of the chimeric transcript in multiple human cells and tissues. Our experimental characterization also detected three variants of the ZC3HAV1L-CHMP1A chimeric RNA, suggesting that these genes are involved in complex splicing. The fusion sequence at the novel exon-exon boundary, and the absence of corresponding DNA rearrangement suggest that this chimeric RNA is likely produced by trans-splicing in human cells.

Indexed as

Gene FusionTrans-SplicingCell LineChromosomes, Human, Pair 16Chromosomes, Human, Pair 7Computational BiologyDatabases, GeneticEndosomal Sorting Complexes Required for TransportExonsGene RearrangementHumansMutant Chimeric ProteinsReal-Time Polymerase Chain ReactionRNA-Binding ProteinsRNA, MessengerSequence Analysis, DNACHMP1A protein, humanEndosomal Sorting Complexes Required for TransportMutant Chimeric ProteinsRNA-Binding ProteinsRNA, MessengerTranscription FactorsVesicular Transport ProteinsZC3HAV1 protein, human

Identifiers

PMID23273016
PMCPMC3538553

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.