Evidence map›Paper›PMID 23271954›Full record

ArticlePLoS biology2012

Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation.

Hina Kalra, Richard J Simpson, Hong Ji, Elena Aikawa, Peter Altevogt, Philip Askenase, Vincent C Bond, Francesc E Borràs, Xandra Breakefield, Vivian Budnik and 46 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 769 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
769citing papers in PubMed, 2 pooled it
27.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

769 citing papers in PubMed, 2 syntheses or guidelines pooled it, 1,349 citations in OpenAlex.

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709 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

56 authors at 20 institutions in 17 countries.

Hina KalraDepartment of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia.
Richard J Simpson
Hong Ji
Elena Aikawa
Peter Altevogt
Philip Askenase
Vincent C Bond
Francesc E Borràs
Xandra Breakefield
Vivian Budnik
Edit Buzas
Giovanni Camussi
Aled Clayton
Emanuele Cocucci
Juan M Falcon-Perez
Susanne Gabrielsson
Yong Song Gho
Dwijendra Gupta
H C Harsha
An Hendrix
Andrew F Hill
Jameel M Inal
Guido Jenster
Eva-Maria Krämer-Albers
Sai Kiang Lim
Alicia Llorente
Jan Lötvall
Antonio Marcilla
Lucia Mincheva-Nilsson
Irina Nazarenko
Rienk Nieuwland
Esther N M Nolte-'t Hoen
Akhilesh Pandey
Tushar Patel
Melissa G Piper
Stefano Pluchino
T S Keshava Prasad
Lawrence Rajendran
Graca Raposo
Michel Record
Gavin E Reid
Francisco Sánchez-Madrid
Raymond M Schiffelers
Pia Siljander
Allan Stensballe
Willem Stoorvogel
Douglas Taylor
Clotilde Thery
Hadi Valadi
Bas W M van Balkom
Jesús Vázquez
Michel Vidal
Marca H M Wauben
María Yáñez-Mó
Margot Zoeller
Suresh Mathivanan
La Trobe University · AUUtrecht University · NLHeidelberg University · DEInstitut Curie · FRInstitute of Bioinformatics · INUniversity Medical Center Utrecht · NLUniversity of Gothenburg · SEAalborg University · DKAcademic Medical Center · NLAgency for Science, Technology and Research · SGBoston Children's Hospital · USBrigham and Women's Hospital · USCentre de Recherche en Cancérologie de Toulouse · FRCIC bioGUNE · ESErasmus University Rotterdam · NLGhent University Hospital · BEHospital Universitario Santa Cristina · ESJacksonville College · USJohannes Gutenberg University Mainz · DEJohns Hopkins Medicine · US

Funding

Morehouse School of Medicine Center of Excellence Research Endowment ProgramS21MD000101 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI MONTGOMERY-RICE, VALERIE C. · 2001 to 2015
$74.3M
Mechanisms of Survival Signaling in Biliary EpitheliaR01DK069370 · NIDDK · SCOTT AND WHITE MEMORIAL HOSPITAL · PI PATEL, TUSHAR · 2005 to 2014
$2.4M
Aortic valve microcalcificationR01HL114805 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI AIKAWA, ELENA · 2012 to 2016
$2.1M
NHLBI NIH HHS R01 HL114805NIDDK NIH HHS R01 DK069370NIMHD NIH HHS S21 MD000101Wellcome Trust 079249
6 · The paper itself

Abstract

Extracellular vesicles (EVs) are membraneous vesicles released by a variety of cells into their microenvironment. Recent studies have elucidated the role of EVs in intercellular communication, pathogenesis, drug, vaccine and gene-vector delivery, and as possible reservoirs of biomarkers. These findings have generated immense interest, along with an exponential increase in molecular data pertaining to EVs. Here, we describe Vesiclepedia, a manually curated compendium of molecular data (lipid, RNA, and protein) identified in different classes of EVs from more than 300 independent studies published over the past several years. Even though databases are indispensable resources for the scientific community, recent studies have shown that more than 50% of the databases are not regularly updated. In addition, more than 20% of the database links are inactive. To prevent such database and link decay, we have initiated a continuous community annotation project with the active involvement of EV researchers. The EV research community can set a gold standard in data sharing with Vesiclepedia, which could evolve as a primary resource for the field.

Indexed as

Databases as TopicResearchApoptosisExosomesExtracellular Space

Identifiers

PMID23271954
PMCPMC3525526
OpenAlexW2128891846

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.