Evidence map›Paper›PMID 23271652›Full record

ArticleNature communications2012

The genome of Prunus mume.

Qixiang Zhang, Wenbin Chen, Lidan Sun, Fangying Zhao, Bangqing Huang, Weiru Yang, Ye Tao, Jia Wang, Zhiqiong Yuan, Guangyi Fan and 22 more

Open access · hybridAbstract read
In one paragraph

Article in Nature communications, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 249 papers.

0numbers the graph read from it
0cells of the map it votes in
249citing papers in PubMed
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

249 citing papers in PubMed, 477 citations in OpenAlex.

  1. Article
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  19. The Combination of Start-Codon-Targeted (SCoT) andInternational journal of molecular sciences · 2025
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  20. Article

189 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 5 institutions in 1 country.

Qixiang ZhangCollege of Landscape Architecture, Beijing Forestry University, Beijing 100083, China. zqx@bjfu.edu.cn
Wenbin Chen
Lidan Sun
Fangying Zhao
Bangqing Huang
Weiru Yang
Ye Tao
Jia Wang
Zhiqiong Yuan
Guangyi Fan
Zhen Xing
Changlei Han
Huitang Pan
Xiao Zhong
Wenfang Shi
Xinming Liang
Dongliang Du
Fengming Sun
Zongda Xu
Ruijie Hao
Tian Lv
Yingmin Lv
Zequn Zheng
Ming Sun
Le Luo
Ming Cai
Yike Gao
Junyi Wang
Ye Yin
Xun Xu
Tangren Cheng
Jun Wang
BGI Group (China) · CNBeijing Forestry University · CNInstitute of Vegetables and Flowers · CNNational Engineering Research Center for Information Technology in Agriculture · CNTibet University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prunus mume (mei), which was domesticated in China more than 3,000 years ago as ornamental plant and fruit, is one of the first genomes among Prunus subfamilies of Rosaceae been sequenced. Here, we assemble a 280M genome by combining 101-fold next-generation sequencing and optical mapping data. We further anchor 83.9% of scaffolds to eight chromosomes with genetic map constructed by restriction-site-associated DNA sequencing. Combining P. mume genome with available data, we succeed in reconstructing nine ancestral chromosomes of Rosaceae family, as well as depicting chromosome fusion, fission and duplication history in three major subfamilies. We sequence the transcriptome of various tissues and perform genome-wide analysis to reveal the characteristics of P. mume, including its regulation of early blooming in endodormancy, immune response against bacterial infection and biosynthesis of flower scent. The P. mume genome sequence adds to our understanding of Rosaceae evolution and provides important data for improvement of fruit trees.

Indexed as

Genome, PlantBase SequenceChromosome MappingChromosomes, PlantEvolution, MolecularMolecular Sequence DataPhylogenyPrunusRosaceaeSequence Analysis, DNA

Identifiers

PMID23271652
PMCPMC3535359
OpenAlexW1964436754

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.