Evidence map›Paper›PMID 23271108›Full record

ArticleThe journal of trauma and acute care surgery2013

A genomic analysis of Clostridium difficile infections in blunt trauma patients.

Philip Alexander Efron, Huazhi Liu, Lawrence Lottenberg, Alex Gervacio Cuenca, Lori Filichia Gentile, Makesha Vernee Miggins, Azra Bihorac, Henry V Baker, Frederick Alan Moore, Lyle Linc Moldawer and 1 more

Open access · greenAbstract read
In one paragraph

Article in The journal of trauma and acute care surgery, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Philip Alexander EfronDepartment of Surgery, University of Florida, Gainesville, Florida 32610, USA.
Huazhi Liu
Lawrence Lottenberg
Alex Gervacio Cuenca
Lori Filichia Gentile
Makesha Vernee Miggins
Azra Bihorac
Henry V Baker
Frederick Alan Moore
Lyle Linc Moldawer
Darwin N Ang
University of Florida · US

Funding

Inflammation and the Response to InjuryU54GM062119 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI TOMPKINS, RONALD GARY · 2001 to 2010
$78.6M
Molecular Biology in Burns and TraumaT32GM008721 · NIGMS · UNIVERSITY OF FLORIDA · PI Philip A Efron · 1999 to 2026
$5.0M
Bridging Sustainable Distribution of TRBD Bioinformatics ResourcesR24GM102656 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI XIAO, WENZHONG · 2012 to 2014
$1.6M
Surgical Oncology Research TrainingT32CA106493 · NCI · UNIVERSITY OF FLORIDA · PI BEHRNS, KEVIN E. · 2005 to 2014
$1.1M
PROMISES: Progenitor Endothelial Cells as a Marker of Endothelial Injury and RepaK23GM087709 · NIGMS · UNIVERSITY OF FLORIDA · PI BIHORAC, AZRA · 2010 to 2013
$497k
NCI NIH HHS T32 CA106493NIGMS NIH HHS K23 GM087709NIGMS NIH HHS R24 GM102656NIGMS NIH HHS T32 GM008721NIGMS NIH HHS U54 GM062119
6 · The paper itself

Abstract

backgroundEvidence demonstrates that susceptibility to Clostridium difficile infection is related to host risk factors as much as bacterial potency. Using blood leukocyte genome-wide expression patterns of severe blunt trauma patients obtained by the National Institute of General Medical Sciences-sponsored Glue Grant Inflammation and the Host Response to Injury, we examined leukocyte genomic profiles of patients with C. difficile infection to determine preinfection and postinfection gene expression changes.

methodsThe genomic responses of 21 severe trauma patients were analyzed (5 C. difficile, 16 controls matched for age and severity of injury). After elimination of probe sets whose expression was below baseline or were unchanged, remaining probe sets underwent hierarchical clustering and principal component analysis. Molecular pathways were generated through Ingenuity Pathways Analysis.

resultsSupervised analysis demonstrated 118 genes whose expression in patients with C. difficile infection varied before and after their infection. Supervised analysis comparing patients with C. difficile infection with matched non-C. difficile patients before infection suggested that the expression of 501 genes were different in the two groups with up to 87% class prediction (p < 0.05). Many of these genes are related to cell-mediated immune responses, signaling, and interaction.

conclusionGenomic analysis of severe blunt trauma patients reveals a distinct leukocyte expression profile of C. difficile both before and after infection. We conclude that an association may exist between a severe trauma patient's leukocyte genomic expression profile and subsequent susceptibility to C. difficile infection. Further prospective expression analysis of this C. difficile population may reveal potential therapeutic interventions and allow early identification of C. difficile-susceptible patients. LEVEL OF EVIDENCE: Prognostic/diagnostic study, level III.

Indexed as

Gene ExpressionGenetic Predisposition to DiseaseClostridium InfectionsGenotypeHumansLeukocytesOligonucleotide Array Sequence AnalysisRisk FactorsWound InfectionWounds, Nonpenetrating

Identifiers

PMID23271108
PMCPMC3864116
OpenAlexW1974676722

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.