Evidence map›Paper›PMID 23270814›Full record

ArticleMethods (San Diego, Calif.)2013

Unraveling protein-protein interactions in clathrin assemblies via atomic force spectroscopy.

Albert J Jin, Eileen M Lafer, Jennifer Q Peng, Paul D Smith, Ralph Nossal

Abstract read
In one paragraph

Article in Methods (San Diego, Calif.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Albert J JinLaboratory of Cellular Imaging and Macromolecular Biophysics, National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health, DHHS, Bethesda, MD 20892, United States. jina@mail.nih.gov
Eileen M Lafer
Jennifer Q Peng
Paul D Smith
Ralph Nossal

Funding

Biomedical Studies and Cellular Imaging via Atomic Force MicroscopyZIAEB000015 · NIBIB · NATIONAL INSTITUTE OF BIOMEDICAL IMAGING AND BIOENGINEERING · PI JIN, ALBERT J · 2009 to 2025
$5.8M
MOLECULAR BIOLOGY OF THE SYNAPSER01NS029051 · NINDS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LAFER, EILEEN M. · 1990 to 2012
$4.0M
Integrative Cell BiophysicsZIAHD008841 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI NOSSAL, RALPH · 2009 to 2015
$2.5M
Molecular Biology of the SynapseR56NS029051 · NINDS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LAFER, EILEEN M. · 2008 to 2013
$744k
Intramural NIH HHS ZIA EB000015Intramural NIH HHS ZIA HD008841NINDS NIH HHS NS029051NINDS NIH HHS R01 NS029051NINDS NIH HHS R56 NS029051
6 · The paper itself

Abstract

Atomic force microscopy (AFM), single molecule force spectroscopy (SMFS), and single particle force spectroscopy (SPFS) are used to characterize intermolecular interactions and domain structures of clathrin triskelia and clathrin-coated vesicles (CCVs). The latter are involved in receptor-mediated endocytosis (RME) and other trafficking pathways. Here, we subject individual triskelia, bovine-brain CCVs, and reconstituted clathrin-AP180 coats to AFM-SMFS and AFM-SPFS pulling experiments and apply novel analytics to extract force-extension relations from very large data sets. The spectroscopic fingerprints of these samples differ markedly, providing important new information about the mechanism of CCV uncoating. For individual triskelia, SMFS reveals a series of events associated with heavy chain alpha-helix hairpin unfolding, as well as cooperative unraveling of several hairpin domains. SPFS of clathrin assemblies exposes weaker clathrin-clathrin interactions that are indicative of inter-leg association essential for RME and intracellular trafficking. Clathrin-AP180 coats are energetically easier to unravel than the coats of CCVs, with a non-trivial dependence on force-loading rate.

Indexed as

AnimalsCattleClathrinClathrin-Coated VesiclesMicroscopy, Atomic ForceProtein FoldingProtein Interaction MappingProtein Structure, TertiarySpectrum AnalysisClathrin

Identifiers

PMID23270814
PMCPMC3608793

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.