Evidence map›Paper›PMID 23269731›Full record

ArticleJournal of clinical microbiology2013

Comparing pulsed-field gel electrophoresis with multilocus sequence typing, spa typing, staphylococcal cassette chromosome mec (SCCmec) typing, and PCR for panton-valentine leukocidin, arcA, and opp3 in methicillin-resistant Staphylococcus aureus isolates at a U.S. Medical Center.

Michael Z David, Alexis Taylor, Ruth Lynfield, Dave J Boxrud, Ginette Short, Diana Zychowski, Susan Boyle-Vavra, Robert S Daum

Open access · bronzeAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 78 citations in OpenAlex.

  1. Post-discharge decolonization of patients harboring methicillin-resistantInfection control and hospital epidemiology · 2023
    Trial
  2. Trial
  3. CharacterizingmSystems · 2025
    Article
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  5. Article
  6. Article
  7. Risk Factors and Outcomes of Hematogenous Vertebral Osteomyelitis in Patients With Staphylococcus aureus Bacteremia.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2023
    Article
  8. Article
  9. Black and White Patients With Staphylococcus aureus Bacteremia Have Similar Outcomes but Different Risk Factors.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2023
    Article
  10. Article
  11. Phage KViruses · 2022
    Article
  12. Article
  13. Article
  14. Genomic Insights into Methicillin-Resistant Staphylococcus aureusApplied and environmental microbiology · 2021
    Article
  15. Characterization ofInfection and drug resistance · 2020
    Article
  16. Changing Characteristics of Staphylococcus aureus Bacteremia: Results From a 21-Year, Prospective, Longitudinal Study.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2019
    Article
  17. Carriage of Methicillin-resistantComparative medicine · 2019
    Article
  18. Association of Primate Veterinarians Guidelines For Mrsa Infections in Nonhuman Primates in Biomedical Research.Journal of the American Association for Laboratory Animal Science : JAALAS · 2019
    Article
  19. Review
  20. Sequential evolution of virulence and resistance during clonal spread of community-acquired methicillin-resistantProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Michael Z DavidDepartment of Medicine, University of Chicago, Chicago, Illinois, USA. mdavid@medicine.bsd.uchicago.edu
Alexis Taylor
Ruth Lynfield
Dave J Boxrud
Ginette Short
Diana Zychowski
Susan Boyle-Vavra
Robert S Daum
University of Chicago · USMinnesota Department of Health · US

Funding

Modeling MRSA in the CommunityU01GM087729 · NIGMS · UNIVERSITY OF CHICAGO · PI LAUDERDALE, DIANE SPERLING, MACAL, CHARLES MARTIN · 2009 to 2013
$3.6M
Role of Signal Transduction in Resistance to Cell-Wall Antimicrobials in MRSAR56AI040481 · NIAID · UNIVERSITY OF CHICAGO · PI BOYLE-VAVRA, SUSAN, DAUM, ROBERT S. · 2009 to 2010
$765k
Recurrent MRSA Infections: A Study of Risk Factors and Molecular EpidemiologyK23AI095361 · NIAID · UNIVERSITY OF CHICAGO · PI DAVID, MICHAEL ZDENEK · 2011 to 2015
$633k
NIAID NIH HHS 1K23 AI095361-01NIAID NIH HHS 2R56AI040481-08A1NIAID NIH HHS K23 AI095361NIAID NIH HHS R56 AI040481NIGMS NIH HHS 1 U01 GM087729-01/B270JANIGMS NIH HHS U01 GM087729PHS HHS R01 A140481-01A1
6 · The paper itself

Abstract

Methicillin-resistant Staphylococcus aureus (MRSA) has become a common cause of skin infections and invasive infections in community dwellers in the United States since the late 1990s. Isolates characterized as USA300 by pulsed-field gel electrophoresis (PFGE) are the predominant strain type in these infections. USA100 and USA500 strains commonly cause health care-associated infections. We compared PFGE with a number of other methods of genotyping in a sample of 149 clinical MRSA isolates from the University of Chicago Medical Center. The 5 USA500 isolates yielded 3 spa types and 2 multilocus sequence types (MLSTs). Among the 24 USA100 isolates, 21 (88%) were of spa type t002, 19 (79%) were of ST5, 2 carried arcA and opp3, and 1 was Panton-Valentine leukocidin positive (PVL(+)). Among the 102 USA300 isolates, 96 (94%) were of ST8 and 94 (92%) were of spa type t008. The combination of traits that provided the best sensitivity (98%), specificity (97%), positive predictive value (PPV) (99%), and negative predictive value (NPV) (95%) for identifying USA300 isolates were the presence of the arcA gene and the presence of the PVL genes (area under the curve, 0.980; 95% confidence interval [CI], 0.955 to 1.0). PFGE did not delineate a homogeneous group of MRSA genetic backgrounds, as documented for other typing methods, particularly for USA500 and USA100 pulsotypes. Documenting the presence of arcA and PVL genes by PCR was an efficient and accurate means of identifying USA300 in a collection of MRSA isolates in which USA300 is common. None of the tested genotyping methods provided an accurate means of identifying the next most common PFGE-based backgrounds, USA100 and USA500.

Indexed as

Academic Medical CentersChicagoGenotypeHumansMethicillin-Resistant Staphylococcus aureusMolecular EpidemiologyMolecular TypingPredictive Value of TestsSensitivity and SpecificityStaphylococcal InfectionsVirulence FactorsVirulence Factors

Identifiers

PMID23269731
PMCPMC3592068
OpenAlexW2129409667

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.