Evidence map›Paper›PMID 23264262›Full record

ArticleCell stress & chaperones2013

Cell-type-dependent access of HSF1 and HSF4 to αB-crystallin promoter during heat shock.

Zhe Jing, Rajendra K Gangalum, Josh Z Lee, Dennis Mock, Suraj P Bhat

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Cell stress & chaperones, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Zhe JingJules Stein Eye Institute, David Geffen School of Medicine at UCLA, Brain Research Institute, University of California, Los Angeles, CA 90095, USA.
Rajendra K Gangalum
Josh Z Lee
Dennis Mock
Suraj P Bhat
University of California, Berkeley · USUniversity of California, Los Angeles · USDoheny Eye Institute · US

Funding

GENE EXPRESSION IN THE NORMAL AND CATARACTOUS LENSR01EY006044 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BHAT, SURAJ P · 1985 to 2010
$4.4M
NEI NIH HHS R01 EY006044
6 · The paper itself

Abstract

Epithelial cells and fibroblasts both express heat shock transcription factors, HSF1 and HSF4, yet they respond to heat shock differentially. For example, while HSP70 is induced in both cell types, the small heat shock protein, αB-crystallin gene (CRYAB) that contains a canonical heat shock promoter, is only induced in fibroblasts. A canonical heat shock promoter contains three or more inverted repeats of the pentanucleotide 5'-nGAAn-3' that make the heat shock element. It is known that, in vitro, promoter architecture (the order and spacing of these repeats) impacts the interaction of various heat shock transcription factors (HSFs) with the heat shock promoter, but in vivo relevance of these binding preferences so far as the expression is concerned is poorly understood. In this report, we first establish cell-type-dependent differential expression of CRYAB in four established cell lines and then working with adult human retinal pigment epithelial cells and NIH3T3 fibroblasts and employing chromatin immunoprecipitation, attempt to relate expression to promoter occupancy by HSF1 and HSF4. We show that HSF4 occupies only CRYAB and not HSP70 promoter in epithelial cells, while HSF1 occupies only HSP70 promoter in both cell types, and cryab promoter, only in heat shocked fibroblasts; HSF4, on the other hand, is never seen on these two promoters in NIH3T3 fibroblasts. This comparative analysis with CRYAB and HSP70 demonstrates that differential heat shock response is controlled by cell-type-dependent access of HSFs (HSF1 and HSF4) to specific promoters, independent of the promoter architecture.

Indexed as

Adultalpha-Crystallin B ChainAnimalsBase SequenceCell Line, TumorChlorocebus aethiopsCOS CellsDNA-Binding ProteinsEpithelial CellsFibroblastsGreen Fluorescent ProteinsHeat-Shock ResponseHeat Shock Transcription FactorsHumansMiceMolecular Sequence Dataalpha-Crystallin B ChainDNA-Binding ProteinsGreen Fluorescent ProteinsHeat Shock Transcription FactorsHSF1 protein, humanHsf1 protein, ratHSF4 protein, humanHsf4 protein, mouseTranscription Factors

Identifiers

PMID23264262
PMCPMC3631099
OpenAlexW2035470335

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.