Evidence map›Paper›PMID 23264051›Full record

ArticleInfection and immunity2013

Mycobacterial trehalose dimycolate reprograms macrophage global gene expression and activates matrix metalloproteinases.

Kaori Sakamoto, Mi Jeong Kim, Elizabeth R Rhoades, Rachel E Allavena, Sabine Ehrt, Helen C Wainwright, David G Russell, Kyle H Rohde

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Journal of bacteriology · 2025
    Review
  3. Article
  4. Molecular Mechanisms of MmpL3 Function and Inhibition.Microbial drug resistance (Larchmont, N.Y.) · 2023
    Review
  5. Generation of Liposomes to Study the Effect ofInternational journal of molecular sciences · 2021
    Article
  6. The Journal of biological chemistry · 2020
    Article
  7. Review
  8. Article
  9. Review
  10. Underestimated Manipulative Roles ofFrontiers in immunology · 2019
    Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Review
  17. Review
  18. Review
  19. The mycobacterial cell envelope-lipids.Cold Spring Harbor perspectives in medicine · 2014
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 3 countries.

Kaori SakamotoDepartment of Pathology, College of Veterinary Medicine, University of Georgia, Athens, Georgia, USA. kaoris@uga.edu
Mi Jeong Kim
Elizabeth R Rhoades
Rachel E Allavena
Sabine Ehrt
Helen C Wainwright
David G Russell
Kyle H Rohde
Cornell University · USUniversity of Cape Town · ZAHarvard University · USUniversity of Central Florida · USUniversity of Georgia · USUniversity of Queensland · AU

Funding

THE ROLE OF THE GRANULOMA IN M. TUBERCULOSIS INFECTIONSR01HL055936 · NHLBI · WASHINGTON UNIVERSITY · PI RUSSELL, DAVID G · 1995 to 2015
$5.4M
Environmental Cues and Responses in TuberculosisR01AI067027 · NIAID · CORNELL UNIVERSITY · PI RUSSELL, DAVID G · 2006 to 2015
$4.0M
NHLBI NIH HHS HL055936NHLBI NIH HHS R01 HL055936NIAID NIH HHS AI067027NIAID NIH HHS R01 AI067027
6 · The paper itself

Abstract

Trehalose 6,6'-dimycolate (TDM) is a cell wall glycolipid and an important virulence factor of mycobacteria. In order to study the role of TDM in the innate immune response to Mycobacterium tuberculosis, microarray analysis was used to examine gene regulation in murine bone marrow-derived macrophages in response to 90-μm-diameter polystyrene microspheres coated with TDM. A large number of genes, particularly those involved in the immune response and macrophage function, were up- or downregulated in response to these TDM-coated beads compared to control beads. Genes involved in the immune response were specifically upregulated in a myeloid differentiation primary response gene 88 (MyD88)-dependent manner. The complexity of the transcriptional response also increased greatly between 2 and 24 h. Matrix metalloproteinases (MMPs) were significantly upregulated at both time points, and this was confirmed by quantitative real-time reverse transcription-PCR (RT-PCR). Using an in vivo Matrigel granuloma model, the presence and activity of MMP-9 were examined by immunohistochemistry and in situ zymography (ISZ), respectively. We found that TDM-coated beads induced MMP-9 expression and activity in Matrigel granulomas. Macrophages were primarily responsible for MMP-9 expression, as granulomas from neutrophil-depleted mice showed staining patterns similar to that for wild-type mice. The relevance of these observations to human disease is supported by the similar induction of MMP-9 in human caseous tuberculosis (TB) granulomas. Given that MMPs likely play an important role in both the construction and breakdown of tuberculous granulomas, our results suggest that TDM may drive MMP expression during TB pathogenesis.

Indexed as

AnimalsCord FactorsGene Expression RegulationGranulomaHumansMacrophagesMatrix MetalloproteinasesMiceMice, Inbred C57BLMice, KnockoutMycobacterium tuberculosisMyeloid Differentiation Factor 88Oligonucleotide Array Sequence AnalysisRNATranscriptomeCord FactorsMatrix MetalloproteinasesMyd88 protein, mouseMyeloid Differentiation Factor 88RNA

Identifiers

PMID23264051
PMCPMC3584883
OpenAlexW1969663551

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.