Evidence map›Paper›PMID 23262493›Full record

ArticleNature structural & molecular biology2013

A pseudoatomic model of the COPII cage obtained from cryo-electron microscopy and mass spectrometry.

Alex J Noble, Qian Zhang, Jason O'Donnell, Hanaa Hariri, Nilakshee Bhattacharya, Alan G Marshall, Scott M Stagg

Open access · greenAbstract readComparative Study
In one paragraph

Article in Nature structural & molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 65 citations in OpenAlex.

  1. Review
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  9. Article
  10. COPII-mediated trafficking at the ER/ERGIC interface.Traffic (Copenhagen, Denmark) · 2019
    Review
  11. Article
  12. Review
  13. Review
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  19. Article
  20. TANGO1/cTAGE5 receptor as a polyvalent template for assembly of large COPII coats.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Alex J NobleDepartment of Physics, Florida State University, Tallahassee, Florida, USA.
Qian Zhang
Jason O'Donnell
Hanaa Hariri
Nilakshee Bhattacharya
Alan G Marshall
Scott M Stagg
Florida State University · USNational High Magnetic Field Laboratory · USUniversity of Georgia · US

Funding

The Structure and Assembly of the COPII CoatR01GM086892 · NIGMS · FLORIDA STATE UNIVERSITY · PI STAGG, SCOTT M · 2010 to 2014
$1.3M
NIGMS NIH HHS R01 GM086892NIGMS NIH HHS R01GM086892
6 · The paper itself

Abstract

COPII vesicles transport proteins from the endoplasmic reticulum to the Golgi apparatus. Previous COPII-cage cryo-EM structures lacked the resolution necessary to determine the residues of Sec13 and Sec31 that mediate assembly and flexibility of the COPII cage. Here we present a 12-Å structure of the human COPII cage, where the tertiary structure of Sec13 and Sec31 is clearly identifiable. We employ this structure and a homology model of the Sec13-Sec31 complex to create a reliable pseudoatomic model of the COPII cage. We combined this model with hydrogen/deuterium-exchange MS analysis to characterize four distinct contact regions at the vertices of the COPII cage. Furthermore, we found that the two-fold symmetry of the Sec31 dimeric region in Sec13-Sec31 is broken upon cage formation and that the resulting hinge is essential to form the proper edge geometry in COPII cages.

Indexed as

Models, MolecularBase SequenceCarrier ProteinsChromatography, High Pressure LiquidCOP-Coated VesiclesCryoelectron MicroscopyDeuterium Exchange MeasurementHumansImage Processing, Computer-AssistedMass SpectrometryMolecular Sequence DataSequence Analysis, DNASequence HomologySpecies SpecificityVesicular Transport ProteinsYeastsCarrier ProteinsSEC13 protein, humanSEC31A protein, humanVesicular Transport Proteins

Identifiers

PMID23262493
PMCPMC3565055
OpenAlexW2064689807

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.