Evidence map›Paper›PMID 23261599›Full record

ArticleChemistry & biology2012

Structure-guided discovery of phenyl-diketo acids as potent inhibitors of M. tuberculosis malate synthase.

Inna V Krieger, Joel S Freundlich, Vijay B Gawandi, Justin P Roberts, Vidyadhar B Gawandi, Qingan Sun, Joshua L Owen, Maria T Fraile, Sofia I Huss, Jose-Luis Lavandera and 2 more

Abstract read
In one paragraph

Article in Chemistry & biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 124 citations in OpenAlex.

  1. Hidden Interactions: Quantum Perspectives in Drug Design.Methods in molecular biology (Clifton, N.J.) · 2026
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  3. Study on the phosphorylation of NADJournal of enzyme inhibition and medicinal chemistry · 2025
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  6. Metabolic Rewiring ofMetabolites · 2024
    Review
  7. Article
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  9. Article
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  11. Tuberculosis: The success tale of less explored dormantFrontiers in cellular and infection microbiology · 2022
    Review
  12. Article
  13. Targeting Non-ReplicatingInternational journal of molecular sciences · 2021
    Review
  14. Review
  15. Review
  16. Article
  17. A Systematic Strategy to Find Potential Therapeutic Targets forFrontiers in molecular biosciences · 2021
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Inna V KriegerDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Joel S Freundlich
Vijay B Gawandi
Justin P Roberts
Vidyadhar B Gawandi
Qingan Sun
Joshua L Owen
Maria T Fraile
Sofia I Huss
Jose-Luis Lavandera
Thomas R Ioerger
James C Sacchettini
Texas A&M University · USGlaxoSmithKline (Spain) · ES

Funding

Vulnerabilities in Mycobacterial Cell-Wall BiogenesisP01AI095208 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SACCHETTINI, JAMES C · 2012 to 2022
$19.8M
The Cloning Protein Production, Crystallization, and X-ray Data Collection CoreP01AI068135 · NIAID · TEXAS A&M AGRILIFE RESEARCH · PI ALBER, THOMAS C · 2006 to 2010
$13.2M
NIAID NIH HHS P01 AI0 68135NIAID NIH HHS P01 AI068135NIAID NIH HHS P01 AI095208
6 · The paper itself

Abstract

The glyoxylate shunt plays an important role in fatty acid metabolism and has been shown to be critical to survival of several pathogens involved in chronic infections. For Mycobacterium tuberculosis (Mtb), a strain with a defective glyoxylate shunt was previously shown to be unable to establish infection in a mouse model. We report the development of phenyl-diketo acid (PDKA) inhibitors of malate synthase (GlcB), one of two glyoxylate shunt enzymes, using structure-based methods. PDKA inhibitors were active against Mtb grown on acetate, and overexpression of GlcB ameliorated this inhibition. Crystal structures of complexes of GlcB with PDKA inhibitors guided optimization of potency. A selected PDKA compound demonstrated efficacy in a mouse model of tuberculosis. The discovery of these PDKA derivatives provides chemical validation of GlcB as an attractive target for tuberculosis therapeutics.

Indexed as

AnimalsAntitubercular AgentsDrug DesignEnzyme InhibitorsFemaleHumansMalate SynthaseMiceMice, Inbred C57BLModels, MolecularMycobacterium tuberculosisTuberculosisAntitubercular AgentsEnzyme InhibitorsMalate Synthase

Identifiers

PMID23261599
PMCPMC3530165
OpenAlexW1996031884

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.