Evidence map›Paper›PMID 23261302›Full record

ArticleAmerican journal of human genetics2013

Exome sequencing identifies mutations in CCDC114 as a cause of primary ciliary dyskinesia.

Michael R Knowles, Margaret W Leigh, Lawrence E Ostrowski, Lu Huang, Johnny L Carson, Milan J Hazucha, Weining Yin, Jonathan S Berg, Stephanie D Davis, Sharon D Dell and 12 more

3 registry-linked trialsOpen access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 3 registered trials, which are not on this map. Cited by 90 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed, 1 pooled it
10.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00450918 completednot on this map

Longitudinal Study of Primary Ciliary Dyskinesia: Participants 5-18 Years of Age

TypeobservationalSponsorUniversity of North Carolina, Chapel HillRan2006 to 2019Enrolled150ConditionsPrimary Ciliary Dyskinesia
NCT00722878 completednot on this map

Early Onset and Progression of Primary Ciliary Dyskinesia Lung Disease Prior to 10 Years of Age

TypeobservationalSponsorUniversity of North Carolina, Chapel HillRan2008 to 2019Enrolled48ConditionsKartagener Syndrome
NCT00807482 recruitingnot on this map

Diagnostic and Clinical Characterization of Patients With Unusual Genetic Disorders of the Airways

TypeobservationalSponsorUniversity of North Carolina, Chapel HillRan2004 to 2027Enrolled1,800ConditionsKartagener Syndrome
3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 1 synthesis or guideline pooled it, 143 citations in OpenAlex.

  1. Pooled it
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  14. International journal of molecular sciences · 2023
    Review
  15. Review
  16. Article
  17. Pathogenic gene variants inFrontiers in genetics · 2023
    Article
  18. Article
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  20. Article

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 8 institutions in 2 countries.

Michael R KnowlesDepartment of Medicine, UNC School of Medicine, Chapel Hill, NC 27599, USA. knowles@med.unc.edu
Margaret W Leigh
Lawrence E Ostrowski
Lu Huang
Johnny L Carson
Milan J Hazucha
Weining Yin
Jonathan S Berg
Stephanie D Davis
Sharon D Dell
Thomas W Ferkol
Margaret Rosenfeld
Scott D Sagel
Carlos E Milla
Kenneth N Olivier
Emily H Turner
Alexandra P Lewis
Michael J Bamshad
Deborah A Nickerson
Jay Shendure
Maimoona A Zariwala
Genetic Disorders of Mucociliary Clearance Consortium
University of North Carolina Health Care · USUniversity of Washington · USHospital for Sick Children · CANational Institute of Allergy and Infectious Diseases · USSeattle Children's Hospital · USStanford University · USUniversity of Colorado Denver · USWashington University in St. Louis · US

Funding

Colorado Clinical and Translational Science Institute (UL1)UL1TR000154 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2012 to 2013
$20.4M
Longitudinal Characterization of Respiratory Tract Exacerbations and Treatment Responses in Primary Ciliary DyskinesiaU54HL096458 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVIS, STEPHANIE DUGGINS · 2009 to 2023
$20.0M
UNC Clinical and Translational Science AwardUL1TR000083 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RUNGE, MARSCHALL S. · 2012 to 2013
$11.6M
Pathogenesis of PCD Lung DiseaseR01HL071798 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KNOWLES, MICHAEL R · 2004 to 2021
$7.2M
SeattleSeqR01HL094976 · NHLBI · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN, GREEN, PHILIP P · 2008 to 2009
$4.0M
ARRA - NHLBI Lung Cohorts Sequencing ProjectRC2HL102923 · NHLBI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, BARNES, KATHLEEN C · 2009 to 2009
$2.6M
Molecular Tools for Genome PartitioningR21HG004749 · NHGRI · UNIVERSITY OF WASHINGTON · PI SHENDURE, JAY ASHOK · 2008 to 2009
$405k
NCATS NIH HHS UL1 TR000083NCATS NIH HHS UL1 TR000154NHGRI NIH HHS 5R21HG004749NHGRI NIH HHS R21 HG004749NHLBI NIH HHS 5R01HL071798NHLBI NIH HHS 5R01HL094976NHLBI NIH HHS 5U54HL096458-06NHLBI NIH HHS HL-102923NHLBI NIH HHS R01 HL071798NHLBI NIH HHS R01 HL094976NHLBI NIH HHS RC2 HL102923NHLBI NIH HHS U54 HL096458
6 · The paper itself

Abstract

Primary ciliary dyskinesia (PCD) is a genetically heterogeneous, autosomal-recessive disorder, characterized by oto-sino-pulmonary disease and situs abnormalities. PCD-causing mutations have been identified in 14 genes, but they collectively account for only ~60% of all PCD. To identify mutations that cause PCD, we performed exome sequencing on six unrelated probands with ciliary outer dynein arm (ODA) defects. Mutations in CCDC114, an ortholog of the Chlamydomonas reinhardtii motility gene DCC2, were identified in a family with two affected siblings. Sanger sequencing of 67 additional individuals with PCD with ODA defects from 58 families revealed CCDC114 mutations in 4 individuals in 3 families. All 6 individuals with CCDC114 mutations had characteristic oto-sino-pulmonary disease, but none had situs abnormalities. In the remaining 5 individuals with PCD who underwent exome sequencing, we identified mutations in two genes (DNAI2, DNAH5) known to cause PCD, including an Ashkenazi Jewish founder mutation in DNAI2. These results revealed that mutations in CCDC114 are a cause of ciliary dysmotility and PCD and further demonstrate the utility of exome sequencing to identify genetic causes in heterogeneous recessive disorders.

Indexed as

MutationAdultChild, PreschoolExomeFemaleGenes, RecessiveHumansKartagener SyndromeMaleMicrotubule-Associated ProteinsMiddle AgedPedigreeProtein IsoformsSequence Analysis, DNAMicrotubule-Associated ProteinsODAD1 protein, humanProtein Isoforms

Identifiers

PMID23261302
PMCPMC3542458
OpenAlexW1963607937

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.