Evidence map›Paper›PMID 23261061›Full record

ArticleBMB reports2012

In-silico and In-vitro based studies of Streptomyces peucetius CYP107N3 for oleic acid epoxidation.

Saurabh Bhattarai, Narayan Prasad Niraula, Jae Kyung Sohng, Tae-Jin Oh

Open access · goldAbstract read
In one paragraph

Article in BMB reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 92% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Saurabh BhattaraiInstitute of Biomolecule Reconstruction (IBR), Department of Pharmaceutical Engineering, SunMoon University, Asan 336-708, Korea.
Narayan Prasad Niraula
Jae Kyung Sohng
Tae-Jin Oh
Sun Moon University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Certain members of the cytochromes P450 superfamily metabolize polyunsaturated long-chain fatty acids to several classes of oxygenated metabolites. An approach based on in silico analysis predicted that Streptomyces peucetius CYP107N3 might be a fatty acid-metabolizing enzyme, showing high homology with epoxidase enzymes. Homology modeling and docking studies of CYP107N3 showed that oleic acid can fit directly into the active site pocket of the double bond of oleic acid within optimum distance of 4.6 Å from the Fe. In order to confirm the epoxidation activity proposed by in silico analysis, a gene coding CYP107N3 was expressed in Escherichia coli. The purified CYP107N3 was shown to catalyze C(9)-C(10) epoxidation of oleic acid in vitro to 9,10-epoxy stearic acid confirmed by ESI-MS, HPLC-MS and GC-MS spectral analysis.

Indexed as

Amino Acid SequenceBinding SitesCatalytic DomainCytochrome P-450 Enzyme SystemEpoxy CompoundsEscherichia coliMolecular Docking SimulationMolecular Sequence DataOleic AcidOxidoreductasesRecombinant ProteinsSequence AlignmentSpectrometry, Mass, Electrospray IonizationStearic AcidsStreptomyces9,10-epoxystearic acidCytochrome P-450 Enzyme SystemepoxidaseEpoxy CompoundsOleic AcidOxidoreductasesRecombinant ProteinsStearic Acids

Identifiers

PMID23261061
PMCPMC4133810
OpenAlexW1977664468

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.