Evidence map›Paper›PMID 23259597›Full record

ArticleGenome biology2012

A microRNA network regulates proliferative timing and extracellular matrix synthesis during cellular quiescence in fibroblasts.

Eric J Suh, Matthew Y Remillard, Aster Legesse-Miller, Elizabeth L Johnson, Johanna M S Lemons, Talia R Chapman, Joshua J Forman, Mina Kojima, Eric S Silberman, Hilary A Coller

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Chronic wounds.Nature reviews. Disease primers · 2022
    Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Is There a Histone Code for Cellular Quiescence?Frontiers in cell and developmental biology · 2021
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Eric J Suh
Matthew Y Remillard
Aster Legesse-Miller
Elizabeth L Johnson
Johanna M S Lemons
Talia R Chapman
Joshua J Forman
Mina Kojima
Eric S Silberman
Hilary A Coller
Princeton University · US

Funding

TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Elisa Victoria Bandera · 1997 to 2026
$94.5M
Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI POWELL, SUSAN M · 2004 to 2013
$30.6M
Quantitavie and Computational Biology Graduate ProgramT32HG003284 · NHGRI · PRINCETON UNIVERSITY · PI Joshua Michael Akey, Stanislav Y. Shvartsman · 2004 to 2026
$9.9M
ONCOLOGY: MOLECULAR BASIS OF CANCERT32CA009528 · NCI · PRINCETON UNIVERSITY · PI BROACH, JAMES R. · 1985 to 2010
$5.9M
The Role of MicroRNAs in Cellular QuiescenceR01GM081686 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI COLLER, HILARY A · 2008 to 2012
$1.4M
A Combined Computational and Experimental Approach to Defining Mechanisms of micrR01GM086465 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI COLLER, HILARY A · 2009 to 2012
$1.1M
The Role of MicroRNAs in Controlling Fibroblast Proliferation and Tumor PromotionK01CA128887 · NCI · PRINCETON UNIVERSITY · PI LEGESSE-MILLER, ASTER · 2009 to 2013
$710k
Howard Hughes Medical InstituteNCI NIH HHS 2T32 CA009528NCI NIH HHS 5T32 CA009528NCI NIH HHS K01 CA128887NCI NIH HHS K01CA128887NCI NIH HHS P30 CA072720NHGRI NIH HHS T32 HG003284NIGMS NIH HHS 1R01 GM081686NIGMS NIH HHS 1R01 GM086465NIGMS NIH HHS P50 GM071508
6 · The paper itself

Abstract

backgroundAlthough quiescence (reversible cell cycle arrest) is a key part in the life history and fate of many mammalian cell types, the mechanisms of gene regulation in quiescent cells are poorly understood. We sought to clarify the role of microRNAs as regulators of the cellular functions of quiescent human fibroblasts.

resultsUsing microarrays, we discovered that the expression of the majority of profiled microRNAs differed between proliferating and quiescent fibroblasts. Fibroblasts induced into quiescence by contact inhibition or serum starvation had similar microRNA profiles, indicating common changes induced by distinct quiescence signals. By analyzing the gene expression patterns of microRNA target genes with quiescence, we discovered a strong regulatory function for miR-29, which is downregulated with quiescence. Using microarrays and immunoblotting, we confirmed that miR-29 targets genes encoding collagen and other extracellular matrix proteins and that those target genes are induced in quiescence. In addition, overexpression of miR-29 resulted in more rapid cell cycle re-entry from quiescence. We also found that let-7 and miR-125 were upregulated in quiescent cells. Overexpression of either one alone resulted in slower cell cycle re-entry from quiescence, while the combination of both together slowed cell cycle re-entry even further.

conclusionsmicroRNAs regulate key aspects of fibroblast quiescence including the proliferative state of the cells as well as their gene expression profiles, in particular, the induction of extracellular matrix proteins in quiescent fibroblasts.

Indexed as

Gene Expression RegulationCell CycleCell Cycle CheckpointsCell ProliferationCells, CulturedCollagenExtracellular Matrix ProteinsFibroblastsGene Regulatory NetworksHumansMicroRNAsMolecular ChaperonesTransforming Growth Factor betaCollagenExtracellular Matrix ProteinsMicroRNAsMIRN125 microRNA, humanMIRN29a microRNA, humanmirnlet7 microRNA, humanMolecular ChaperonesTransforming Growth Factor beta

Identifiers

PMID23259597
PMCPMC3924601
OpenAlexW2161710887

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.