Evidence map›Paper›PMID 23258533›Full record

ArticleThe Journal of biological chemistry2013

A tRNA-independent mechanism for transamidosome assembly promotes aminoacyl-tRNA transamidation.

Gayathri N Silva, Shirin Fatma, Ashley M Floyd, Frederic Fischer, Pitak Chuawong, Amanda N Cruz, Rachel M Simari, Nilesh Joshi, Daniel Kern, Tamara L Hendrickson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  6. Ancient translation factor is essential for tRNA-dependent cysteine biosynthesis in methanogenic archaea.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Gayathri N SilvaDepartment of Chemistry, Wayne State University, Detroit, Michigan 48230, USA.
Shirin Fatma
Ashley M Floyd
Frederic Fischer
Pitak Chuawong
Amanda N Cruz
Rachel M Simari
Nilesh Joshi
Daniel Kern
Tamara L Hendrickson
Wayne State University · USCentre National de la Recherche Scientifique · FRJohns Hopkins University · US

Funding

Substrate Divergence in Aminoacyl-tRNA BiosynthesisR01GM071480 · NIGMS · WAYNE STATE UNIVERSITY · PI HENDRICKSON, TAMARA L · 2005 to 2009
$1.3M
NIGMS NIH HHS GM071480NIGMS NIH HHS R01 GM071480
6 · The paper itself

Abstract

Many bacteria lack genes encoding asparaginyl- and/or glutaminyl-tRNA synthetase and consequently rely on an indirect path for the synthesis of both Asn-tRNA(Asn) and Gln-tRNA(Gln). In some bacteria such as Thermus thermophilus, efficient delivery of misacylated tRNA to the downstream amidotransferase (AdT) is ensured by formation of a stable, tRNA-dependent macromolecular complex called the Asn-transamidosome. This complex enables direct delivery of Asp-tRNA(Asn) from the non-discriminating aspartyl-tRNA synthetase to AdT, where it is converted into Asn-tRNA(Asn). Previous characterization of the analogous Helicobacter pylori Asn-transamidosome revealed that it is dynamic and cannot be stably isolated, suggesting the possibility of an alternative mechanism to facilitate assembly of a stable complex. We have identified a novel protein partner called Hp0100 as a component of a stable, tRNA-independent H. pylori Asn-transamidosome; this complex contains a non-discriminating aspartyl-tRNA synthetase, AdT, and Hp0100 but does not require tRNA(Asn) for assembly. Hp0100 also enhances the capacity of AdT to convert Asp-tRNA(Asn) into Asn-tRNA(Asn) by ∼35-fold. Our results demonstrate that bacteria have adopted multiple divergent methods for transamidosome assembly and function.

Indexed as

AmidinotransferasesBacterial ProteinsHelicobacter pyloriMultienzyme ComplexesRNA, BacterialRNA, Transfer, Amino AcylAmidinotransferasesBacterial ProteinsMultienzyme ComplexesRNA, BacterialRNA, Transfer, Amino Acyl

Identifiers

PMID23258533
PMCPMC3567636
OpenAlexW2076050183

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.