Evidence map›Paper›PMID 23257886›Full record

ArticleNature2012

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.

Andrew H Paterson, Jonathan F Wendel, Heidrun Gundlach, Hui Guo, Jerry Jenkins, Dianchuan Jin, Danny Llewellyn, Kurtis C Showmaker, Shengqiang Shu, Joshua Udall and 64 more

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Nature, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 707 papers.

0numbers the graph read from it
0cells of the map it votes in
707citing papers in PubMed
102.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

707 citing papers in PubMed, 1,442 citations in OpenAlex.

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  7. Distinct evolutionary trajectories of gene duplication modes in 40 diploid cotton genomes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
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  20. Artificial Selection on theInternational journal of molecular sciences · 2026
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647 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

74 authors at 20 institutions in 10 countries.

Andrew H PatersonPlant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602, USA.
Jonathan F Wendel
Heidrun Gundlach
Hui Guo
Jerry Jenkins
Dianchuan Jin
Danny Llewellyn
Kurtis C Showmaker
Shengqiang Shu
Joshua Udall
Mi-jeong Yoo
Robert Byers
Wei Chen
Adi Doron-Faigenboim
Mary V Duke
Lei Gong
Jane Grimwood
Corrinne Grover
Kara Grupp
Guanjing Hu
Tae-ho Lee
Jingping Li
Lifeng Lin
Tao Liu
Barry S Marler
Justin T Page
Alison W Roberts
Elisson Romanel
William S Sanders
Emmanuel Szadkowski
Xu Tan
Haibao Tang
Chunming Xu
Jinpeng Wang
Zining Wang
Dong Zhang
Lan Zhang
Hamid Ashrafi
Frank Bedon
John E Bowers
Curt L Brubaker
Peng W Chee
Sayan Das
Alan R Gingle
Candace H Haigler
David Harker
Lucia V Hoffmann
Ran Hovav
Donald C Jones
Cornelia Lemke
Shahid Mansoor
Mehboob ur Rahman
Lisa N Rainville
Aditi Rambani
Umesh K Reddy
Jun-kang Rong
Yehoshua Saranga
Brian E Scheffler
Jodi A Scheffler
David M Stelly
Barbara A Triplett
Allen Van Deynze
Maite F S Vaslin
Vijay N Waghmare
Sally A Walford
Robert J Wright
Essam A Zaki
Tianzhen Zhang
Elizabeth S Dennis
Klaus F X Mayer
Daniel G Peterson
Daniel S Rokhsar
Xiyin Wang
Jeremy Schmutz
University of Georgia · USIowa State University · USNorth China University of Science and Technology · CNBrigham Young University · USJoint Genome Institute · USMississippi Delta Community College · USMississippi State University · USPlant Industry · AUAgricultural Research Organization · ILCommonwealth Scientific and Industrial Research Organisation · AUInstitute of Bioinformatics and Systems Biology · DENational Institute for Biotechnology and Genetic Engineering · PKUniversidade Federal do Rio de Janeiro · BRUniversity of California, Davis · USAgricultural Genetic Engineering Research Institute · EGBioscience Research · USBrazilian Agricultural Research Corporation · BRCentral Institute for Cotton Research · INCotton (United States) · USHebrew University of Jerusalem · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polyploidy often confers emergent properties, such as the higher fibre productivity and quality of tetraploid cottons than diploid cottons bred for the same environments. Here we show that an abrupt five- to sixfold ploidy increase approximately 60 million years (Myr) ago, and allopolyploidy reuniting divergent Gossypium genomes approximately 1-2 Myr ago, conferred about 30-36-fold duplication of ancestral angiosperm (flowering plant) genes in elite cottons (Gossypium hirsutum and Gossypium barbadense), genetic complexity equalled only by Brassica among sequenced angiosperms. Nascent fibre evolution, before allopolyploidy, is elucidated by comparison of spinnable-fibred Gossypium herbaceum A and non-spinnable Gossypium longicalyx F genomes to one another and the outgroup D genome of non-spinnable Gossypium raimondii. The sequence of a G. hirsutum A(t)D(t) (in which 't' indicates tetraploid) cultivar reveals many non-reciprocal DNA exchanges between subgenomes that may have contributed to phenotypic innovation and/or other emergent properties such as ecological adaptation by polyploids. Most DNA-level novelty in G. hirsutum recombines alleles from the D-genome progenitor native to its New World habitat and the Old World A-genome progenitor in which spinnable fibre evolved. Coordinated expression changes in proximal groups of functionally distinct genes, including a nuclear mitochondrial DNA block, may account for clusters of cotton-fibre quantitative trait loci affecting diverse traits. Opportunities abound for dissecting emergent properties of other polyploids, particularly angiosperms, by comparison to diploid progenitors and outgroups.

Indexed as

Biological EvolutionCotton FiberPolyploidyAllelesCacaoChromosomes, PlantDiploidyGene DuplicationGenes, PlantGenome, PlantGossypiumMolecular Sequence AnnotationPhylogenyVitis

Identifiers

PMID23257886
OpenAlexW1976182511

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.