Evidence map›Paper›PMID 23257362›Full record

Trial reportThe Journal of clinical investigation2013

Prognostically relevant gene signatures of high-grade serous ovarian carcinoma.

Roel G W Verhaak, Pablo Tamayo, Ji-Yeon Yang, Diana Hubbard, Hailei Zhang, Chad J Creighton, Sian Fereday, Michael Lawrence, Scott L Carter, Craig H Mermel and 32 more

Abstract readClinical TrialMulticenter Study
In one paragraph

Trial report in The Journal of clinical investigation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 380 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
380citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

380 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. The Impact of Stroma Admixture on Molecular Subtypes and Prognostic Gene Signatures in Serous Ovarian Cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
    Pooled it
  3. TCGA-TCIA Impact on Radiogenomics Cancer Research: A Systematic Review.International journal of molecular sciences · 2019
    Pooled it
  4. Trial
  5. Science translational medicine · 2023
    Trial
  6. Trial
  7. Article
  8. Article
  9. Article
  10. The KPROCS Study: A Real-World and Research Resource to Investigate Multilevel Determinants of Ovarian Cancer Treatment and Survival.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

320 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

42 authors.

Roel G W VerhaakDepartment of Bioinformatics and Computational Biology, MD Anderson Cancer Center, Houston, Texas 77030, USA. rverhaak@mdanderson.org
Pablo Tamayo
Ji-Yeon Yang
Diana Hubbard
Hailei Zhang
Chad J Creighton
Sian Fereday
Michael Lawrence
Scott L Carter
Craig H Mermel
Aleksandar D Kostic
Dariush Etemadmoghadam
Gordon Saksena
Kristian Cibulskis
Sekhar Duraisamy
Keren Levanon
Carrie Sougnez
Aviad Tsherniak
Sebastian Gomez
Robert Onofrio
Stacey Gabriel
Lynda Chin
Nianxiang Zhang
Paul T Spellman
Yiqun Zhang
Rehan Akbani
Katherine A Hoadley
Ari Kahn
Martin Köbel
David Huntsman
Robert A Soslow
Anna Defazio
Michael J Birrer
Joe W Gray
John N Weinstein
David D Bowtell
Ronny Drapkin
Jill P Mesirov
Gad Getz
Douglas A Levine
Matthew Meyerson
Cancer Genome Atlas Research Network

Funding

Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6M
X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MARK G FRATTINI · 1985 to 2026
$116.6M
Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Genome Characterization Center (GCC)U24CA143867 · NCI · BROAD INSTITUTE, INC. · PI GABRIEL, STACEY, MEYERSON, MATTHEW L. · 2009 to 2016
$17.0M
Integrative Pipeline for Analysis & Translational Application of TCGA Data (GDAC)U24CA143883 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AKBANI, REHAN, MILLS, GORDON B. · 2009 to 2016
$10.6M
Supporting Integrative Genomic Analysis Users with GenePatternR01GM074024 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MESIROV, JILL P. · 2005 to 2019
$6.6M
Knowledge-based Gene Expression Analysis for Biomedical and Cancer ResearchR01CA121941 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MESIROV, JILL P. · 2006 to 2016
$5.1M
TCGA Data Analysis Center at BerkeleyU24CA143799 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI SPEED, TERENCE PAUL, SPELLMAN, PAUL T. · 2009 to 2016
$4.9M
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA016056NCI NIH HHS P30 CA016672NCI NIH HHS R01 CA121941NCI NIH HHS U24 CA143799NCI NIH HHS U24 CA143867NCI NIH HHS U24CA143867NCI NIH HHS U24 CA143883NCI NIH HHS U24CA143883NHGRI NIH HHS U54 HG003067NIGMS NIH HHS R01 GM074024NIGMS NIH HHS T32 GM007753
6 · The paper itself

Abstract

Because of the high risk of recurrence in high-grade serous ovarian carcinoma (HGS-OvCa), the development of outcome predictors could be valuable for patient stratification. Using the catalog of The Cancer Genome Atlas (TCGA), we developed subtype and survival gene expression signatures, which, when combined, provide a prognostic model of HGS-OvCa classification, named "Classification of Ovarian Cancer" (CLOVAR). We validated CLOVAR on an independent dataset consisting of 879 HGS-OvCa expression profiles. The worst outcome group, accounting for 23% of all cases, was associated with a median survival of 23 months and a platinum resistance rate of 63%, versus a median survival of 46 months and platinum resistance rate of 23% in other cases. Associating the outcome prediction model with BRCA1/BRCA2 mutation status, residual disease after surgery, and disease stage further optimized outcome classification. Ovarian cancer is a disease in urgent need of more effective therapies. The spectrum of outcomes observed here and their association with CLOVAR signatures suggests variations in underlying tumor biology. Prospective validation of the CLOVAR model in the context of additional prognostic variables may provide a rationale for optimal combination of patient and treatment regimens.

Indexed as

Gene Expression ProfilingGene Expression Regulation, NeoplasticModels, BiologicalAdultAgedBRCA1 ProteinBRCA2 ProteinDisease-Free SurvivalFemaleHumansMiddle AgedMutationNeoplasm GradingOvarian NeoplasmsPredictive Value of TestsProspective StudiesBRCA1 ProteinBRCA1 protein, humanBRCA2 ProteinBRCA2 protein, human

Identifiers

PMID23257362
PMCPMC3533304

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.