Evidence map›Paper›PMID 23256594›Full record

ArticleACS chemical biology2013

Novel acid-activated fluorophores reveal a dynamic wave of protons in the intestine of Caenorhabditis elegans.

Aaron Bender, Zachary R Woydziak, Liqiang Fu, Michael Branden, Zhenguo Zhou, Brian D Ackley, Blake R Peterson

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.8field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

  1. Transcriptomic profiling of the embryonicbioRxiv : the preprint server for biology · 2026
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  3. Understanding the factors regulating host-microbiome interactions usingPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
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  12. ACS central science · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Aaron BenderDepartment of Medicinal Chemistry, The University of Kansas, Lawrence, KS 66045, USA.
Zachary R Woydziak
Liqiang Fu
Michael Branden
Zhenguo Zhou
Brian D Ackley
Blake R Peterson
University of Kansas · US

Funding

Understanding the mechanobiology of stem cells in a microengineered 3D cardiac tissue environment with cardiomyopathyP20GM103638 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HOLMSTROM, ERIK D · 2012 to 2021
$22.1M
Synthetic Cell Surface Receptors for Anticancer Drug DeliveryR01CA083831 · NCI · UNIVERSITY OF KANSAS LAWRENCE · PI PETERSON, BLAKE · 2000 to 2012
$2.7M
Tissue-specific delivery of probes by control of membrane trafficking of endoprotRC1GM091086 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI PETERSON, BLAKE · 2009 to 2010
$1.0M
NCI NIH HHS R01 CA083831NCI NIH HHS R01-CA83831NIGMS NIH HHS P20 GM103638NIGMS NIH HHS P20-GM103638NIGMS NIH HHS RC1 GM091086NIGMS NIH HHS RC1-GM91086
6 · The paper itself

Abstract

Unlike the digestive systems of vertebrate animals, the lumen of the alimentary canal of Caenorhabditis elegans is unsegmented and weakly acidic (pH ~4.4), with ultradian fluctuations to pH > 6 every 45-50 s. To probe the dynamics of this acidity, we synthesized novel acid-activated fluorophores termed Kansas Reds. These dicationic derivatives of rhodamine B become concentrated in the lumen of the intestine of living C. elegans and exhibit tunable pKa values (2.3-5.4), controlled by the extent of fluorination of an alkylamine substituent, that allow imaging of a range of acidic fluids in vivo. Fluorescence video microscopy of animals freely feeding on these fluorophores revealed that acidity in the C. elegans intestine is discontinuous; the posterior intestine contains a large acidic segment flanked by a smaller region of higher pH at the posterior-most end. Remarkably, during the defecation motor program, this hot spot of acidity rapidly moves from the posterior intestine to the anterior-most intestine where it becomes localized for up to 7 s every 45-50 s. Studies of pH-insensitive and base-activated fluorophores as well as mutant and transgenic animals revealed that this dynamic wave of acidity requires the proton exchanger PBO-4, does not involve substantial movement of fluid, and likely involves the sequential activation of proton transporters on the apical surface of intestinal cells. Lacking a specific organ that sequesters low pH, C. elegans compartmentalizes acidity by producing of a dynamic hot spot of protons that rhythmically migrates from the posterior to anterior intestine.

Indexed as

ProtonsAnimalsCaenorhabditis elegansFluorescent DyesHydrogen-Ion ConcentrationIntestinal MucosaMicroscopy, FluorescenceMolecular StructureFluorescent DyesProtons

Identifiers

PMID23256594
PMCPMC3600105
OpenAlexW1965781298

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.