Evidence map›Paper›PMID 23256577›Full record

ArticleJournal of proteome research2013

Quantitative peptidomics for discovery of circadian-related peptides from the rat suprachiasmatic nucleus.

Ji Eun Lee, Leonid Zamdborg, Bruce R Southey, Norman Atkins, Jennifer W Mitchell, Mingxi Li, Martha U Gillette, Neil L Kelleher, Jonathan V Sweedler

Abstract read
In one paragraph

Article in Journal of proteome research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 57 citations in OpenAlex.

  1. Review
  2. Review
  3. Label-Free Quantitation of Endogenous Peptides.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Vasopressin in circadian function of SCN.Journal of biosciences · 2020
    Review
  14. Review
  15. Article
  16. Article
  17. Neuropeptidomics of the Rat Habenular Nuclei.Journal of proteome research · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Ji Eun LeeDepartment of Chemistry, Beckman Institute, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, USA.
Leonid Zamdborg
Bruce R Southey
Norman Atkins
Jennifer W Mitchell
Mingxi Li
Martha U Gillette
Neil L Kelleher
Jonathan V Sweedler
University of Illinois Urbana-Champaign · USNorthwestern University · US

Funding

The UIUC Neuroproteomics Center on Cell-Cell SignalingP30DA018310 · NIDA · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI NEIL L KELLEHER · 2004 to 2026
$24.9M
The Neurometabolome of a Sensory Neuronal NetworkR01DE018866 · NIDCR · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI SWEEDLER, JONATHAN V. · 2007 to 2011
$1.6M
Neuropeptidomics of Clock-to-Clock CouplingR01HL092571 · NHLBI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI GILLETTE, MARTHA U · 2009 to 2010
$967k
Deciphering the Histone Code by Mass Spectrometry and High Dimensional StatisticsF30DA026672 · NIDA · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ZAMDBORG, LEONID · 2010 to 2012
$140k
NHLBI NIH HHS HL092571NHLBI NIH HHS R01 HL092571NIDA NIH HHS DA018310NIDA NIH HHS DA026672NIDA NIH HHS F30 DA026672NIDA NIH HHS P30 DA018310NIDCR NIH HHS DE018866NIDCR NIH HHS R01 DE018866
6 · The paper itself

Abstract

In mammals the suprachiasmatic nucleus (SCN), the master circadian clock, is sensitive to light input via the optic chiasm and synchronizes many daily biological rhythms. Here we explore variations in the expression levels of neuropeptides present in the SCN of rats using a label-free quantification approach that is based on integrating peak intensities between daytime, Zeitgeber time (ZT) 6, and nighttime, ZT 18. From nine analyses comparing the levels between these two time points, 10 endogenous peptides derived from eight prohormones exhibited significant differences in their expression levels (adjusted p-value <0.05). Of these, seven peptides derived from six prohormones, including GRP, PACAP, and CART, exhibited ≥ 30% increases at ZT 18, and the VGRPEWWMDYQ peptide derived from proenkephalin A showed a >50% increase at nighttime. Several endogenous peptides showing statistically significant changes in this study have not been previously reported to alter their levels as a function of time of day, nor have they been implicated in prior functional SCN studies. This information on peptide expression changes serves as a resource for discovering unknown peptide regulators that affect circadian rhythms in the SCN.

Indexed as

Circadian ClocksCircadian RhythmAmino Acid SequenceAnimalsCocaine- and Amphetamine-Regulated Transcript ProteinGastrin-Releasing PeptideGene Expression RegulationLightMaleMolecular Sequence DataNerve Tissue ProteinsNeuropeptidesPeptide FragmentsPituitary Adenylate Cyclase-Activating PolypeptideProteomicsRatsCocaine- and Amphetamine-Regulated Transcript ProteinGastrin-Releasing PeptideNerve Tissue ProteinsNeuropeptidesPeptide FragmentsPituitary Adenylate Cyclase-Activating PolypeptideVasoactive Intestinal Peptide

Identifiers

PMID23256577
PMCPMC3562399
OpenAlexW2170431273

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.