Evidence map›Paper›PMID 23256532›Full record

ArticleJournal of medicinal chemistry2013

Structural-functional studies of Burkholderia cenocepacia D-glycero-β-D-manno-heptose 7-phosphate kinase (HldA) and characterization of inhibitors with antibiotic adjuvant and antivirulence properties.

Ting-Wai Lee, Theodore B Verhey, Pavel A Antiperovitch, Dmytro Atamanyuk, Nicolas Desroy, Chrystelle Oliveira, Alexis Denis, Vincent Gerusz, Elodie Drocourt, Slade A Loutet and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 4 countries.

Ting-Wai LeeDepartment of Biochemistry and Biomedical Sciences and Michael G. DeGroote Institute for Infectious Disease Research, McMaster University, 1280 Main Street West, Hamilton, Ontario, L8S 4K1, Canada.
Theodore B Verhey
Pavel A Antiperovitch
Dmytro Atamanyuk
Nicolas Desroy
Chrystelle Oliveira
Alexis Denis
Vincent Gerusz
Elodie Drocourt
Slade A Loutet
Mohamad A Hamad
Christian Stanetty
Sara N Andres
Seiji Sugiman-Marangos
Paul Kosma
Miguel A Valvano
Francois Moreau
Murray S Junop
Mutabilis (France) · FRMcMaster University · CAWestern University · CABOKU University · AT

Funding

X-RAY STRUCTURE OF RIFM PROTEIN FROM THE BIOSYNTHESIS PATHWAY OF THE ANSAMYCIN AP41RR012408 · NCRR · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI ORVILLE, ALLEN M · 1998 to 2011
$32.2M
Macromolecular Crystallography at the National Synchrotron Light SourceP41GM103473 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI SWEET, ROBERT M · 2012 to 2013
$4.9M
CIHR XNE-8705NCRR NIH HHS P41 RR012408NCRR NIH HHS P41RR012408NIGMS NIH HHS P41 GM103473NIGMS NIH HHS P41GM103473
6 · The paper itself

Abstract

As an essential constituent of the outer membrane of Gram-negative bacteria, lipopolysaccharide contributes significantly to virulence and antibiotic resistance. The lipopolysaccharide biosynthetic pathway therefore serves as a promising therapeutic target for antivirulence drugs and antibiotic adjuvants. Here we report the structural-functional studies of D-glycero-β-D-manno-heptose 7-phosphate kinase (HldA), an absolutely conserved enzyme in this pathway, from Burkholderia cenocepacia. HldA is structurally similar to members of the PfkB carbohydrate kinase family and appears to catalyze heptose phosphorylation via an in-line mechanism mediated mainly by a conserved aspartate, Asp270. Moreover, we report the structures of HldA in complex with two potent inhibitors in which both inhibitors adopt a folded conformation and occupy the nucleotide-binding sites. Together, these results provide important insight into the mechanism of HldA-catalyzed heptose phosphorylation and necessary information for further development of HldA inhibitors.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsBurkholderia cenocepaciaCrystallography, X-RayModels, MolecularMutationPhosphotransferases (Alcohol Group Acceptor)Protein ConformationStructure-Activity RelationshipVirulenceAnti-Bacterial AgentsBacterial ProteinsPhosphotransferases (Alcohol Group Acceptor)

Identifiers

PMID23256532
PMCPMC3585733
OpenAlexW2018161141

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.