Evidence map›Paper›PMID 23255792›Full record

ArticleJournal of virology2013

CD4 T-cell memory responses to viral infections of humans show pronounced immunodominance independent of duration or viral persistence.

Lichen Jing, Joshua T Schiffer, Tiana M Chong, Joseph J Bruckner, D Huw Davies, Phillip L Felgner, Juergen Haas, Anna Wald, G M G M Verjans, David M Koelle

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Medicina (Kaunas, Lithuania) · 2022
    Review
  6. Article
  7. Review
  8. Article
  9. A Systematic, Unbiased Mapping of CD8Frontiers in immunology · 2020
    Article
  10. Article
  11. Article
  12. Review
  13. Broad-Based CD4Frontiers in immunology · 2017
    Article
  14. Extensive CD4 and CD8 T Cell Cross-Reactivity between Alphaherpesviruses.Journal of immunology (Baltimore, Md. : 1950) · 2016
    Article
  15. Article
  16. Article
  17. Pathogenesis of varicelloviruses in primates.The Journal of pathology · 2015
    Review
  18. Review
  19. p53MVA therapy in patients with refractory gastrointestinal malignancies elevates p53-specific CD8+ T-cell responses.Clinical cancer research : an official journal of the American Association for Cancer Research · 2014
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 4 countries.

Lichen JingDepartment of Medicine, University of Washington, Seattle, Washington, USA.
Joshua T Schiffer
Tiana M Chong
Joseph J Bruckner
D Huw Davies
Phillip L Felgner
Juergen Haas
Anna Wald
G M G M Verjans
David M Koelle
University of Washington · USUniversity of California, Irvine · USErasmus University Rotterdam · NLLudwig-Maximilians-Universität München · DE

Funding

Vaccines and Diagnostics TrialsU54AI065359 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARBOUR, ALAN G. · 2005 to 2013
$88.8M
THE PERINATAL COMPLICATIONS OF ASYMPTOMATIC GENITAL HERPES SIMPLEX VIRUSP01AI030731 · NIAID · UNIVERSITY OF WASHINGTON · PI ZHU, JIA · 1991 to 2017
$34.3M
Scanning B. pseudomallei proteome for vaccine antigensU01AI061363 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI FELGNER, PHILIP LOUIS · 2004 to 2008
$5.7M
Scanning the F. tularensis Proteome for Vaccine AntigensU01AI056464 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI FELGNER, PHILIP LOUIS · 2003 to 2006
$3.0M
Seriodiagnostic arrays for biodefense and emerging infectious diseasesR44AI058365 · NIAID · IMMPORT THERAPEUTICS, INC. · PI DAVIES, DAVID HUW · 2008 to 2010
$3.0M
Genomic systems approach to measure HSV-1-specific T-cell dominance in humansR01AI094019 · NIAID · UNIVERSITY OF WASHINGTON · PI KOELLE, DAVID M · 2012 to 2016
$1.9M
Vaccinia: T-cell immunity and homing to skinR01AI067496 · NIAID · UNIVERSITY OF WASHINGTON · PI KOELLE, DAVID M · 2006 to 2009
$1.4M
Vaccinia Proteome Affinity Reagents From Phage DisplayR41AI058365 · NIAID · IMMPORT THERAPEUTICS, INC. · PI FELGNER, PHILIP LOUIS · 2004 to 2005
$995k
Intense Validation of a Mathematical Model of Herpes Simplex Virus-2 PathogenesisK23AI087206 · NIAID · UNIVERSITY OF WASHINGTON · PI SCHIFFER, JOSHUA TISDELL · 2010 to 2014
$641k
HSV-1-specific T-cell responses in human sensory gangliaR21AI081060 · NIAID · UNIVERSITY OF WASHINGTON · PI KOELLE, DAVID M · 2009 to 2010
$333k
Population Genetics Analysis Program: Immunity to Vaccines/Infections-266040069N01AI040069 · NIAID · UNIVERSITY OF WASHINGTON · PI WILSON, CHRISTOPHER · 2005 to 2006
–
NIAID NIH HHS AI058365NIAID NIH HHS AI067496NIAID NIH HHS AI081060NIAID NIH HHS AI094019NIAID NIH HHS AI30731NIAID NIH HHS K23 AI087206NIAID NIH HHS K23 AI0872606NIAID NIH HHS N01 AI040069NIAID NIH HHS P01 AI030731NIAID NIH HHS R01 AI067496NIAID NIH HHS R01 AI094019NIAID NIH HHS R21 AI081060NIAID NIH HHS R41 AI058365NIAID NIH HHS R44 AI058365NIAID NIH HHS U01 AI056464NIAID NIH HHS U01AI056464NIAID NIH HHS U01 AI061363NIAID NIH HHS U01AI061363NIAID NIH HHS U54 AI065359
6 · The paper itself

Abstract

Little is known concerning immunodominance within the CD4 T-cell response to viral infections and its persistence into long-term memory. We tested CD4 T-cell reactivity against each viral protein in persons immunized with vaccinia virus (VV), either recently or more than 40 years ago, as a model self-limited viral infection. Similar tests were done with persons with herpes simplex virus 1 (HSV-1) infection as a model chronic infection. We used an indirect method capable of counting the CD4 T cells in blood reactive with each individual viral protein. Each person had a clear CD4 T-cell dominance hierarchy. The top four open reading frames accounted for about 40% of CD4 virus-specific T cells. Early and long-term memory CD4 T-cell responses to vaccinia virus were mathematically indistinguishable for antigen breadth and immunodominance. Despite the chronic intermittent presence of HSV-1 antigen, the CD4 T-cell dominance and diversity patterns for HSV-1 were identical to those observed for vaccinia virus. The immunodominant CD4 T-cell antigens included both long proteins abundantly present in virions and shorter, nonstructural proteins. Limited epitope level and direct ex vivo data were also consistent with pronounced CD4 T-cell immunodominance. We conclude that human memory CD4 T-cell responses show a pattern of pronounced immunodominance for both chronic and self-limited viral infections and that this pattern can persist over several decades in the absence of antigen.

Indexed as

Immunologic MemoryCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCells, CulturedHerpes SimplexHerpesvirus 1, HumanHumansImmunity, CellularInterferon-gammaInterleukin-2Smallpox VaccineTumor Necrosis Factor-alphaTumor Necrosis Factor Receptor Superfamily, Member 9Vaccines, AttenuatedVaccinia virusDryVax vaccineInterferon-gammaInterleukin-2Smallpox VaccineTumor Necrosis Factor-alphaTumor Necrosis Factor Receptor Superfamily, Member 9Vaccines, Attenuated

Identifiers

PMID23255792
PMCPMC3571405
OpenAlexW2101356848

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.