Evidence map›Paper›PMID 23255133›Full record

ArticleCell cycle (Georgetown, Tex.)2013

Separation of intra-S checkpoint protein contributions to DNA replication fork protection and genomic stability in normal human fibroblasts.

Stephanie L Smith-Roe, Shivani S Patel, Yingchun Zhou, Dennis A Simpson, Shangbang Rao, Joseph G Ibrahim, Marila Cordeiro-Stone, William K Kaufmann

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

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  3. Claspin and Cancer: Where Are We Now?International journal of molecular sciences · 2025
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  4. Implications ofCancers · 2020
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  6. Roles of OB-Fold Proteins in Replication Stress.Frontiers in cell and developmental biology · 2020
    Review
  7. Article
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  10. Inhibition of Survivin with YM155 Induces Durable Tumor Response in Anaplastic Thyroid Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2015
    Article
  11. Article
  12. Article
  13. Mechanisms of chromosomal instability in melanoma.Environmental and molecular mutagenesis · 2014
    Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Stephanie L Smith-RoeDepartment of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. stephanie.smith-roe@nih.gov
Shivani S Patel
Yingchun Zhou
Dennis A Simpson
Shangbang Rao
Joseph G Ibrahim
Marila Cordeiro-Stone
William K Kaufmann
University of North Carolina at Chapel Hill · USCenter for Environmental Health · USCommunities In Schools of Orange County · USSegeberger Kliniken · DEUNC Lineberger Comprehensive Cancer Center

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Melissa A. Troester · 2001 to 2026
$36.3M
The System of Response to DNA Damage Suppresses Environmental MelanomagenesisP01ES014635 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SANCAR, AZIZ · 2007 to 2011
$6.7M
ENVIRONMENTAL PATHOLOGYT32ES007017 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KAUFMAN, DAVID G. · 1985 to 2011
$5.1M
Cellular Responses to Environmental Insults and Risk for Melanoma DevelopmentR01ES015856 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CORDEIRO-STONE, MARILA · 2007 to 2011
$1.2M
NCI NIH HHS P30 CA016086NCI NIH HHS P30CA06086NCI NIH HHS P30CA16086NIEHS NIH HHS ES007017NIEHS NIH HHS ES014635NIEHS NIH HHS ES015856NIEHS NIH HHS P01 ES014635NIEHS NIH HHS P30 ES010126NIEHS NIH HHS P30ES10126NIEHS NIH HHS R01 ES015856NIEHS NIH HHS T32 ES007017
6 · The paper itself

Abstract

The ATR-dependent intra-S checkpoint protects DNA replication forks undergoing replication stress. The checkpoint is enforced by ATR-dependent phosphorylation of CHK1, which are mediated by the TIMELESS-TIPIN complex and CLASPIN. Although loss of checkpoint proteins is associated with spontaneous chromosomal instability, few studies have examined the contribution of these proteins to unchallenged DNA metabolism in human cells that have not undergone carcinogenesis or crisis. Furthermore, the TIMELESS-TIPIN complex and CLASPIN may promote replication fork protection independently of CHK1 activation. Normal human fibroblasts (NHF) were depleted of ATR, CHK1, TIMELESS, TIPIN or CLASPIN and chromosomal aberrations, DNA synthesis, activation of the DNA damage response (DDR) and clonogenic survival were evaluated. This work demonstrates in NHF lines from two individuals that ATR and CHK1 promote chromosomal stability by different mechanisms that depletion of CHK1 produces phenotypes that resemble more closely the depletion of TIPIN or CLASPIN than the depletion of ATR, and that TIMELESS has a distinct contribution to suppression of chromosomal instability that is independent of its heterodimeric partner, TIPIN. Therefore, ATR, CHK1, TIMELESS-TIPIN and CLASPIN have functions for preservation of intrinsic chromosomal stability that is separate from their cooperation for activation of the intra-S checkpoint response to experimentally induced replication stress. These data reveal a complex and coordinated program of genome maintenance enforced by proteins known for their intra-S checkpoint function.

Indexed as

Chromosome AberrationsAdaptor Proteins, Signal TransducingAtaxia Telangiectasia Mutated ProteinsBlotting, WesternCarrier ProteinsCell Cycle ProteinsCheckpoint Kinase 1DNA-Binding ProteinsDNA ReplicationFibroblastsFlow CytometryGenomic InstabilityHumansIntracellular Signaling Peptides and ProteinsLikelihood FunctionsNuclear ProteinsAdaptor Proteins, Signal TransducingAtaxia Telangiectasia Mutated ProteinsATR protein, humanCarrier ProteinsCell Cycle ProteinsCheckpoint Kinase 1CHEK1 protein, humanCLSPN protein, humanDNA-Binding ProteinsIntracellular Signaling Peptides and ProteinsNuclear ProteinsProtein KinasesProtein Serine-Threonine KinasesTIMELESS protein, humanTipin protein, humanATRCHK1chromosomal aberrationCLASPINgenome maintenancehuman fibroblastintra-S checkpointreplication fork protectionTIMELESSTIPIN

Identifiers

PMID23255133
PMCPMC3575462
OpenAlexW2133692708

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.