Evidence map›Paper›PMID 23254996›Full record

ArticleGlycobiology2013

KSGal6ST generates galactose-6-O-sulfate in high endothelial venules but does not contribute to L-selectin-dependent lymphocyte homing.

Michael L Patnode, Shin-Yi Yu, Chu-Wen Cheng, Ming-Yi Ho, Lotten Tegesjö, Keiichiro Sakuma, Kenji Uchimura, Kay-Hooi Khoo, Reiji Kannagi, Steven D Rosen

Abstract read
In one paragraph

Article in Glycobiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  6. Probing the binding specificities of human Siglecs by cell-based glycan arrays.Proceedings of the National Academy of Sciences of the United States of America · 2021
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  16. KSGal6ST is essential for the 6-sulfation of galactose within keratan sulfate in early postnatal brain.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2014
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Michael L PatnodeDepartment of Anatomy and Program in Biomedical Sciences, University of California, San Francisco, CA 94143-0452, USA.
Shin-Yi Yu
Chu-Wen Cheng
Ming-Yi Ho
Lotten Tegesjö
Keiichiro Sakuma
Kenji Uchimura
Kay-Hooi Khoo
Reiji Kannagi
Steven D Rosen
Institute of Biological Chemistry, Academia Sinica · TWUniversity of California, San Francisco · USAcademia Sinica · TWAichi Cancer Center · JPNagoya University · JP

Funding

High-throughput targeted mutagenesis of mouse stem cell linesU01HG004080 · NHGRI · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI DE JONG, PIETER J. · 2006 to 2010
$28.1M
Production of Targeted Null Mutations for 10,000 Genes in C57BL/6 ES CellsU01HG004085 · NHGRI · REGENERON PHARMACEUTICALS, INC. · PI VALENZUELA, DAVID MANUEL · 2006 to 2010
$25.3M
Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KRUMMEL, MATTHEW F · 2003 to 2019
$21.8M
UCD KOMP PROJECT REPOSITORYU42RR024244 · NCRR · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LLOYD, KC KENT · 2007 to 2010
$7.9M
Sulfotransferases in the Synthesis on L-Selectin LigandsR01GM057411 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ROSEN, STEVEN D · 1999 to 2010
$3.3M
CELL SURFACE LECTINS AND INTERCELLULAR ADHESIONR37GM023547 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI ROSEN, STEVEN D · 1996 to 2005
$2.3M
CELL SURFACE LECTINS &INTERCELLULAR ADHESIONR01GM023547 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ROSEN, STEVEN D · 1985 to 2009
$1.6M
NCRR NIH HHS U42 RR024244NCRR NIH HHS U42RR024244NHGRI NIH HHS U01HG004080NHGRI NIH HHS U01 HG004085NHGRI NIH HHS U01HG004085NIDDK NIH HHS P30 DK063720NIGMS NIH HHS GM-23547NIGMS NIH HHS GM-57411NIGMS NIH HHS R01 GM023547NIGMS NIH HHS R01 GM057411NIGMS NIH HHS R37 GM023547
6 · The paper itself

Abstract

The addition of sulfate to glycan structures can regulate their ability to serve as ligands for glycan-binding proteins. Although sulfate groups present on the monosaccharides glucosamine, uronate, N-acetylglucosamine and N-acetylgalactosamine are recognized by defined receptors that mediate important functions, the functional significance of galactose-6-O-sulfate (Gal6S) is not known. However, in vitro studies using synthetic glycans and sulfotransferase overexpression implicate Gal6S as a binding determinant for the lymphocyte homing receptor, L-selectin. Only two sulfotransferases have been shown to generate Gal6S, namely keratan sulfate galactose 6-O-sulfotransferase (KSGal6ST) and chondroitin 6-O-sulfotransferase-1 (C6ST-1). In the present study, we use mice deficient in KSGal6ST and C6ST-1 to test whether Gal6S contributes to ligand recognition by L-selectin in vivo. First, we establish that KSGal6ST is selectively expressed in high endothelial venules (HEVs) in lymph nodes and Peyer's patches. We also determine by mass spectrometry that KSGal6ST generates Gal6S on several classes of O-glycans in peripheral lymph nodes. Furthermore, KSGal6ST, but not C6ST-1, is required for the generation of the Gal6S-containing glycan, 6,6'-disulfo-3'sLN (Siaα2→3[6S]Galβ1→4[6S]GlcNAc) or a closely related structure in lymph node HEVs. Nevertheless, L-selectin-dependent short-term homing of lymphocytes is normal in KSGal6ST-deficient mice, indicating that the Gal6S-containing structures we detected do not contribute to L-selectin ligand recognition in this setting. These results refine our understanding of the biological ligands for L-selectin and introduce a mouse model for investigating the functions of Gal6S in other contexts.

Indexed as

AnimalsCarbohydrate SulfotransferasesCell AdhesionEndothelium, VascularGalactoseL-SelectinLymphatic VesselsLymph NodesLymphocytesMiceMice, Inbred C57BLSulfotransferasesCarbohydrate SulfotransferasesGalactosegalactose 6-sulfateL-SelectinSulfotransferases

Identifiers

PMID23254996
PMCPMC3555504
OpenAlexW2105789411

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.