Evidence map›Paper›PMID 23254757›Full record

ArticleMolecular biology reports2013

Oct4 and the small molecule inhibitor, SC1, regulates Tet2 expression in mouse embryonic stem cells.

Yongyan Wu, Zekun Guo, Ye Liu, Bo Tang, Yi Wang, Liping Yang, Juan Du, Yong Zhang

Abstract read
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In one paragraph

Article in Molecular biology reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Mechanisms that regulate the activities of TET proteins.Cellular and molecular life sciences : CMLS · 2022
    Review
  7. Article
  8. TETology: Epigenetic Mastermind in Action.Applied biochemistry and biotechnology · 2021
    Review
  9. Review
  10. Review
  11. The Complexity of TET2 Functions in Pluripotency and Development.Frontiers in cell and developmental biology · 2020
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Yongyan WuCollege of Veterinary Medicine, Northwest A&F University, Key Laboratory of Animal Biotechnology, Ministry of Agriculture, 3 Taicheng Road, Yangling 712100, China.
Zekun Guo
Ye Liu
Bo Tang
Yi Wang
Liping Yang
Juan Du
Yong Zhang
Northwest A&F University · CNNorth West Agriculture and Forestry University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ten eleven translocation (Tet) family of proteins includes three members (Tet1-3), all of which have the capacity to convert 5-methylcytosine to 5-hydroxymethylcytosine in a 2-oxoglutarate- and Fe(II)-dependent manner. Tet1 and Tet2 are highly expressed in undifferentiated embryonic stem cells (ESCs), and this expression decreases upon differentiation. Notably, the expression patterns of Tet1 and Tet2 in ESCs parallels that of pluripotency genes. To date, however, the mechanisms underlying the regulation of Tet gene expression in ESCs remain largely unexplored. Here we report that the pluripotency transcription factor, Oct4, directly regulates the expression of Tet2. Using RNAi, real time quantitative PCR, dual-luciferase reporter assays and electrophoretic mobility shift assays, we show that Oct4 promotes Tet2 transcription by binding to consensus sites in the proximal promoter region. Furthermore, we explored the role of the small molecule inhibitor, SC1 (pluripotin) on Tet gene expression. We show that SC1 promotes Tet3 expression, but represses Tet1 and Tet2 expression. Our findings indicate that Tet2 are crucial downstream targets of the pluripotency factor Oct4, and highlight a role for Oct4 in the regulation of DNA methylation in ESCs. In addition, these findings also provide a new insight into drug-mediated gene regulation.

Indexed as

5-MethylcytosineAnimalsCell DifferentiationCell LineCytosineDioxygenasesDNA-Binding ProteinsDNA MethylationEmbryonic Stem CellsGene Expression Regulation, DevelopmentalMiceOctamer Transcription Factor-3Proto-Oncogene ProteinsPyrazolesPyrimidines5-hydroxymethylcytosine5-MethylcytosineCytosineDioxygenasesDNA-Binding ProteinsOctamer Transcription Factor-3Pou5f1 protein, mouseProto-Oncogene ProteinsPyrazolesPyrimidinesSC1 compoundTET1 protein, mouseTet2 protein, mouseTet3 protein, mouse

Identifiers

PMID23254757
OpenAlexW1998206702

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.