Evidence map›Paper›PMID 23254457›Full record

ArticleAnalytical and bioanalytical chemistry2013

Elimination of autofluorescence background from fluorescence tissue images by use of time-gated detection and the AzaDiOxaTriAngulenium (ADOTA) fluorophore.

Ryan M Rich, Dorota L Stankowska, Badri P Maliwal, Thomas Just Sørensen, Bo W Laursen, Raghu R Krishnamoorthy, Zygmunt Gryczynski, Julian Borejdo, Ignacy Gryczynski, Rafal Fudala

Abstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

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  15. Three-Dimensional Imaging in Stem Cell-Based Researches.Frontiers in veterinary science · 2021
    Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ryan M RichDepartment of Molecular Biology and Immunology, Center for Commercialization of Fluorescence Technologies, University of North Texas Health Science Center, Fort Worth, TX 76107, USA.
Dorota L Stankowska
Badri P Maliwal
Thomas Just Sørensen
Bo W Laursen
Raghu R Krishnamoorthy
Zygmunt Gryczynski
Julian Borejdo
Ignacy Gryczynski
Rafal Fudala

Funding

Novel Fluorophores for Molecular and Cellular ImagingR01EB012003 · NIBIB · UNIVERSITY OF NORTH TEXAS HLTH SCI CTR · PI GRYCZYNSKI, ZYGMUNT, YU, YIHUA BRUCE · 2011 to 2014
$1.8M
Single Cross-Bridge Kinetics in Transgenic Mouse Hearts Expressing FHC MutationsR01HL090786 · NHLBI · UNIVERSITY OF NORTH TEXAS HLTH SCI CTR · PI BOREJDO, JULIAN, SZCZESNA-CORDARY, DANUTA · 2009 to 2012
$1.6M
NHLBI NIH HHS 1R01HL090786-01A2NHLBI NIH HHS R01 HL090786NIBIB NIH HHS R01 EB012003NIBIB NIH HHS R01EB12003
6 · The paper itself

Abstract

Sample autofluorescence (fluorescence of inherent components of tissue and fixative-induced fluorescence) is a significant problem in direct imaging of molecular processes in biological samples. A large variety of naturally occurring fluorescent components in tissue results in broad emission that overlaps the emission of typical fluorescent dyes used for tissue labeling. In addition, autofluorescence is characterized by complex fluorescence intensity decay composed of multiple components whose lifetimes range from sub-nanoseconds to a few nanoseconds. For these reasons, the real fluorescence signal of the probe is difficult to separate from the unwanted autofluorescence. Here we present a method for reducing the autofluorescence problem by utilizing an azadioxatriangulenium (ADOTA) dye with a fluorescence lifetime of approximately 15 ns, much longer than those of most of the components of autofluorescence. A probe with such a long lifetime enables us to use time-gated intensity imaging to separate the signal of the targeting dye from the autofluorescence. We have shown experimentally that by discarding photons detected within the first 20 ns of the excitation pulse, the signal-to-background ratio is improved fivefold. This time-gating eliminates over 96 % of autofluorescence. Analysis using a variable time-gate may enable quantitative determination of the bound probe without the contributions from the background.

Indexed as

ArtifactsAnimalsFluorescent DyesHeterocyclic Compounds, 4 or More RingsMicroscopy, FluorescenceMicrotomyMolecular ImagingOptic NervePhotonsRatsRetinaSignal-To-Noise RatioSpectrometry, FluorescenceTime FactorsFluorescent DyesHeterocyclic Compounds, 4 or More RingsN-(omega-N'-hydroxysuccinimde butanoate)azadioxatriangulenium

Identifiers

PMID23254457
PMCPMC3566262

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.