Evidence map›Paper›PMID 23254285›Full record

ArticleThe Journal of experimental medicine2013

Mechanism of DNA resection during intrachromosomal recombination and immunoglobulin class switching.

Anne Bothmer, Philipp C Rommel, Anna Gazumyan, Federica Polato, Colleen R Reczek, Matthias F Muellenbeck, Sonja Schaetzlein, Winfried Edelmann, Phang-Lang Chen, Robert M Brosh and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
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  5. Review
  6. Review
  7. Article
  8. CtIP-mediated DNA resection is dispensable for IgH class switch recombination by alternative end-joining.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Review
  10. Article
  11. Article
  12. DNA double-strand break response factors influence end-joining features of IgH class switch and general translocation junctions.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. PREVENTING THE CHROMOSOMAL TRANSLOCATIONS THAT CAUSE CANCER.Transactions of the American Clinical and Climatological Association · 2016
    Article
  18. Article
  19. Article
  20. Aberrant recombination and repair during immunoglobulin class switching in BRCA1-deficient human B cells.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 9 institutions in 1 country.

Anne BothmerLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065, USA.
Philipp C Rommel
Anna Gazumyan
Federica Polato
Colleen R Reczek
Matthias F Muellenbeck
Sonja Schaetzlein
Winfried Edelmann
Phang-Lang Chen
Robert M Brosh
Rafael Casellas
Thomas Ludwig
Richard Baer
André Nussenzweig
Michel C Nussenzweig
Davide F Robbiani
Howard Hughes Medical Institute · USRockefeller University · USAlbert Einstein College of Medicine · USCancer Genetics (United States) · USNational Cancer Institute · USColumbia University Irving Medical Center · USNational Institute on Aging · USNational Institutes of Health · USUniversity of California, Irvine · US

Funding

RAG and AID biologyZIAAR041148 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI O'SHEA, JOHN · 2009 to 2025
$44.8M
Relationship between DNA damage detection and signalingZIABC010959 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI NUSSENZWEIG, ANDRE A. · 2009 to 2025
$27.0M
DNA RepairZIABC010283 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI NUSSENZWEIG, ANDRE A. · 2009 to 2025
$27.0M
Roles Of DNA Helicases In Pathways Required For Maintenance Of Genomic StabilityZIAAG000741 · NIA · NATIONAL INSTITUTE ON AGING · PI BROSH, ROBERT · 2009 to 2025
$7.6M
Class Switch Recombination in B LymphocytesR37AI037526 · NIAID · ROCKEFELLER UNIVERSITY · PI NUSSENZWEIG, MICHEL C · 2014 to 2023
$5.4M
SIGNALLING PATHWAYS IN AUTOIMMUNITYR01AI037526 · NIAID · ROCKEFELLER UNIVERSITY · PI NUSSENZWEIG, MICHEL C · 1994 to 2012
$5.0M
Model Genetic Systems to Study DNA RepairZIAAG000752 · NIA · NATIONAL INSTITUTE ON AGING · PI BROSH, ROBERT · 2009 to 2025
$4.8M
Fanconi Anemia PathwayZIAAG000753 · NIA · NATIONAL INSTITUTE ON AGING · PI BROSH, ROBERT · 2009 to 2025
$4.3M
The Role of Late MMR Proteins in DNA Repair and CancerR01CA093484 · NCI · YESHIVA UNIVERSITY · PI EDELMANN, WINFRIED · 2002 to 2011
$3.7M
Howard Hughes Medical InstituteIntramural NIH HHSNCI NIH HHS CA93484NCI NIH HHS R01 CA093484NIAID NIH HHS AI037526NIAID NIH HHS R01 AI037526NIAID NIH HHS R37 AI037526
6 · The paper itself

Abstract

DNA double-strand breaks (DSBs) are byproducts of normal cellular metabolism and obligate intermediates in antigen receptor diversification reactions. These lesions are potentially dangerous because they can lead to deletion of genetic material or chromosome translocation. The chromatin-binding protein 53BP1 and the histone variant H2AX are required for efficient class switch (CSR) and V(D)J recombination in part because they protect DNA ends from resection and thereby favor nonhomologous end joining (NHEJ). Here, we examine the mechanism of DNA end resection in primary B cells. We find that resection depends on both CtBP-interacting protein (CtIP, Rbbp8) and exonuclease 1 (Exo1). Inhibition of CtIP partially rescues the CSR defect in 53BP1- and H2AX-deficient lymphocytes, as does interference with the RecQ helicases Bloom (Blm) and Werner (Wrn). We conclude that CtIP, Exo1, and RecQ helicases contribute to the metabolism of DNA ends during DSB repair in B lymphocytes and that minimizing resection favors efficient CSR.

Indexed as

Recombination, GeneticAnimalsBase SequenceB-LymphocytesCarrier ProteinsCell Cycle ProteinsChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDNA Breaks, Double-StrandedDNA RepairDNA Repair EnzymesEndodeoxyribonucleasesEndonucleasesExodeoxyribonucleasesHistonesImmunoglobulin IsotypesBloom syndrome proteinCarrier ProteinsCell Cycle ProteinsChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDNA Repair EnzymesEndodeoxyribonucleasesEndonucleasesexodeoxyribonuclease IExodeoxyribonucleasesgamma-H2AX protein, mouseHistonesImmunoglobulin IsotypesMre11a protein, mouseMRE11 Homologue ProteinNuclear ProteinsRBBP8 protein, mouseRecQ HelicasesTrp53bp1 protein, mouseTumor Suppressor p53-Binding Protein 1Werner Syndrome HelicaseWrn protein, mouse

Identifiers

PMID23254285
PMCPMC3549709
OpenAlexW2134042008

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.