Evidence map›Paper›PMID 23254132›Full record

ArticleJournal of clinical microbiology2013

Serotype analysis of Streptococcus pneumoniae in lung and nasopharyngeal aspirates from children in the Gambia by MassTag PCR.

Rafal Tokarz, Thomas Briese, Gerard Morris, Readon Ideh, Osaretin Chimah, Bernard Ebruke, Aaloki Desai, Saddef Haq, Stephen Sameroff, Stephen R C Howie and 1 more

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Rafal TokarzCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA. rt2249@columbia.edu
Thomas Briese
Gerard Morris
Readon Ideh
Osaretin Chimah
Bernard Ebruke
Aaloki Desai
Saddef Haq
Stephen Sameroff
Stephen R C Howie
W Ian Lipkin

Funding

Viral Pathogenesis and TherapeuticsU54AI057158 · NIAID · WADSWORTH CENTER · PI LIPKIN, W. IAN · 2003 to 2014
$100.8M
Medical Research Council MC_U190088478Medical Research Council MC_UP_A900_1124NIAID NIH HHS AI057158NIAID NIH HHS U54 AI057158
6 · The paper itself

Abstract

Streptococcus pneumoniae strains comprise >90 serotypes. Here we describe establishment of a MassTag PCR assay designed to serotype S. pneumoniae and demonstrate its utility in tests using 31 paired lung aspirate and nasopharyngeal aspirate samples from children with pneumonia in the Gambia. Serotypes 1, 5, and 14 in were implicated in 90% of lung infections. With 5 exceptions, serotypes found in lung aspirates were also found in nasopharyngeal aspirates.

Indexed as

Molecular TypingSerotypingChild, PreschoolGambiaHumansInfantLungNasopharynxPneumonia, PneumococcalPolymerase Chain ReactionStreptococcus pneumoniae

Identifiers

PMID23254132
PMCPMC3592066

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.