Evidence map›Paper›PMID 23253478›Full record

ArticleThe Journal of cell biology2012

Nucleotide excision repair-initiating proteins bind to oxidative DNA lesions in vivo.

Hervé Menoni, Jan H J Hoeijmakers, Wim Vermeulen

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 95 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. XPG: a multitasking genome caretaker.Cellular and molecular life sciences : CMLS · 2022
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Mfd regulates RNA polymerase association with hard-to-transcribe regions in vivo, especially those with structured RNAs.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. DNA Oxidation and Excision Repair Pathways.International journal of molecular sciences · 2019
    Review
  20. The DNA damage response to transcription stress.Nature reviews. Molecular cell biology · 2019
    Review

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Hervé MenoniDepartment of Genetics, Erasmus MC, 3015 GE Rotterdam, Netherlands. h.menoni@erasmusmc.nl
Jan H J Hoeijmakers
Wim Vermeulen
Erasmus University Rotterdam · NLErasmus MC · NL

Funding

THE IMPACT OF CELLULAR DEFENSE ON THE ROLE OF Ku80 IN GENOME MAINTENANCE AND LONGP01AG017242 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI VIJG, JAN · 1999 to 2023
$46.1M
European Research Council 233424NIA NIH HHS 1P01AG17242-02NIA NIH HHS P01 AG017242
6 · The paper itself

Abstract

Base excision repair (BER) is the main repair pathway to eliminate abundant oxidative DNA lesions such as 8-oxo-7,8-dihydroguanine. Recent data suggest that the key transcription-coupled nucleotide excision repair factor (TC-NER) Cockayne syndrome group B (CSB) and the global genome NER-initiating factor XPC are implicated in the protection of cells against oxidative DNA damages. Our novel live-cell imaging approach revealed a strong and very rapid recruitment of XPC and CSB to sites of oxidative DNA lesions in living cells. The absence of detectable accumulation of downstream NER factors at the site of local oxidative DNA damage provide the first in vivo indication of the involvement of CSB and XPC in the repair of oxidative DNA lesions independent of the remainder of the NER reaction. Interestingly, CSB exhibited different and transcription-dependent kinetics in the two compartments studied (nucleolus and nucleoplasm), suggesting a direct transcription-dependent involvement of CSB in the repair of oxidative lesions associated with different RNA polymerases but not involving other NER proteins.

Indexed as

DNA RepairCell LineCell NucleolusDactinomycinDNA-Binding ProteinsDNA GlycosylasesDNA HelicasesDNA Repair EnzymesFluorescence Recovery After PhotobleachingGreen Fluorescent ProteinsGuanineHumansKineticsMicroscopy, FluorescenceNucleic Acid Synthesis InhibitorsOxidation-Reduction8-hydroxyguanineDactinomycinDNA-Binding ProteinsDNA GlycosylasesDNA HelicasesDNA Repair EnzymesERCC6 protein, humanGreen Fluorescent ProteinsGuanineNucleic Acid Synthesis Inhibitorsoxoguanine glycosylase 1, humanPoly-ADP-Ribose Binding ProteinsRecombinant Fusion ProteinsXPC protein, human

Identifiers

PMID23253478
PMCPMC3529521
OpenAlexW2082877032

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.