Evidence map›Paper›PMID 23253382›Full record

ArticleFEMS yeast research2013

amdSYM, a new dominant recyclable marker cassette for Saccharomyces cerevisiae.

Daniel Solis-Escalante, Niels G A Kuijpers, Nadine Bongaerts, Irina Bolat, Lizanne Bosman, Jack T Pronk, Jean-Marc Daran, Pascale Daran-Lapujade

Abstract read
In one paragraph

Article in FEMS yeast research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

81 citing papers in PubMed.

  1. Article
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  4. Review
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  9. Article
  10. A Chimeric ORF Fusion Phenotypic Reporter forJournal of fungi (Basel, Switzerland) · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Practical Approaches for the YeastInternational journal of molecular sciences · 2023
    Review
  17. Article
  18. Review
  19. Article
  20. Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Daniel Solis-EscalanteDepartment of Biotechnology, Delft University of Technology, Delft, The Netherlands.
Niels G A Kuijpers
Nadine Bongaerts
Irina Bolat
Lizanne Bosman
Jack T Pronk
Jean-Marc Daran
Pascale Daran-Lapujade

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite the large collection of selectable marker genes available for Saccharomyces cerevisiae, marker availability can still present a hurdle when dozens of genetic manipulations are required. Recyclable markers, counterselectable cassettes that can be removed from the targeted genome after use, are therefore valuable assets in ambitious metabolic engineering programs. In the present work, the new recyclable dominant marker cassette amdSYM, formed by the Ashbya gossypii TEF2 promoter and terminator and a codon-optimized acetamidase gene (Aspergillus nidulans amdS), is presented. The amdSYM cassette confers S. cerevisiae the ability to use acetamide as sole nitrogen source. Direct repeats flanking the amdS gene allow for its efficient recombinative excision. As previously demonstrated in filamentous fungi, loss of the amdS marker cassette from S. cerevisiae can be rapidly selected for by growth in the presence of fluoroacetamide. The amdSYM cassette can be used in different genetic backgrounds and represents the first counterselectable dominant marker gene cassette for use in S. cerevisiae. Furthermore, using astute cassette design, amdSYM excision can be performed without leaving a scar or heterologous sequences in the targeted genome. The present work therefore demonstrates that amdSYM is a useful addition to the genetic engineering toolbox for Saccharomyces laboratory, wild, and industrial strains.

Indexed as

AcetamidesAmidohydrolasesAspergillus nidulansBase SequenceFluoroacetatesFungal ProteinsGene DeletionGenes, DominantGenetic EngineeringGenetic MarkersMolecular Sequence DataMutagenesis, InsertionalPromoter Regions, GeneticRecombination, GeneticSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsacetamidaseacetamideAcetamidesAmidohydrolasesfluoroacetamideFluoroacetatesFungal ProteinsGenetic MarkersSaccharomyces cerevisiae Proteins

Identifiers

PMID23253382
PMCPMC3563226

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.