Evidence map›Paper›PMID 23251137›Full record

ArticleFrontiers in immunology2012

CD4 binding determinant mimicry for HIV vaccine design.

Yasuhiro Nishiyama, Stephanie Planque, Carl V Hanson, Richard J Massey, Sudhir Paul

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Yasuhiro NishiyamaChemical Immunology Research Center, Department of Pathology and Laboratory Medicine, University of Texas-Houston Medical School Houston, TX, USA.
Stephanie Planque
Carl V Hanson
Richard J Massey
Sudhir Paul
The University of Texas Health Science Center at Houston · USCalifornia Health and Human Services Agency · USValent BioSciences (United States) · US

Funding

U OF TEXAS HLTH SCI CTR HOUSTON CENTER FOR CLINICAL AND TRANSLATIONAL SCIENCESUL1RR024148 · NCRR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2006 to 2010
$27.9M
Nucleophilic Antibodies: Characterization and InductionR01AI067020 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI PAUL, SUDHIR · 2007 to 2011
$2.2M
gp120 covalent analogs as candidate HIV vaccinesR01AI058865 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI PAUL, SUDHIR · 2004 to 2008
$1.7M
Covalent Vaccine for HIVR41AI093261 · NIAID · COVALENT BIOSCIENCE, INC. · PI NISHIYAMA, YASUHIRO · 2011 to 2012
$600k
Neutralizing antibodies raised by covalent immunizationR21AI062455 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI NISHIYAMA, YASUHIRO · 2006 to 2007
$439k
Proteolytic Antibody HIVcidesR21AI071951 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI PAUL, SUDHIR · 2006 to 2007
$384k
Development of monoclonal catalytic antibodies for HIV immunotherapyR41AI087527 · NIAID · COVALENT IMMUNOLOGY PRODUCTS, INC. · PI PLANQUE, STEPHANIE A. · 2010 to 2010
$173k
NCRR NIH HHS UL1 RR024148NIAID NIH HHS R01 AI058865NIAID NIH HHS R01 AI067020NIAID NIH HHS R21 AI062455NIAID NIH HHS R21 AI071951NIAID NIH HHS R41 AI087527NIAID NIH HHS R41 AI093261
6 · The paper itself

Abstract

The immunodominant epitopes expressed by the HIV-1 envelope protein gp120 are hypermutable, defeating attempts to develop an effective HIV vaccine. Targeting the structurally conserved gp120 determinant that binds host CD4 receptors (CD4BD) and initiates infection is a more promising route to vaccination, but this has proved difficult because of the conformational flexibility of gp120 and immune evasion mechanisms used by the virus. Mimicking the outer CD4BD conformational epitopes is difficult because of their discontinuous nature. The CD4BD region composed of residues 421-433 (CD4BD(core)) is a linear epitope, but this region possesses B cell superantigenic character. While superantigen epitopes are vulnerable to a small subset of spontaneously produced neutralizing antibodies present in humans without infection (innate antibodies), their non-covalent binding to B cell receptors (BCRs) does not stimulate an effective adaptive response from B cells. Covalent binding at naturally occurring nucleophilic sites of the BCRs by an electrophilic gp120 (E-gp120) analog is a promising solution. E-gp120 induces the synthesis of neutralizing antibodies the CD4BD(core). The highly energetic covalent reaction is hypothesized to convert the abortive superantigens-BCR interaction into a stimulatory signal, and the binding of a spatially distinct epitope at the traditional combining site of the BCRs may furnish a second stimulatory signal. Flexible synthetic peptides can detect pre-existing CD4BD(core)-specific neutralizing antibodies. However, induced-fit conformational transitions of the peptides dictated by the antibody combining site structure may induce the synthesis of non-neutralizing antibodies. Successful vaccine targeting of the CD4BD will require a sufficiently rigid immunogen that mimics the native epitope conformation and bypasses B cell checkpoints restricting synthesis of the neutralizing antibodies.

Indexed as

B cell superantigencatalytic antibodyCD4 binding determinanthuman immunodeficiency virusneutralizing antibodyvaccine

Identifiers

PMID23251137
PMCPMC3523313
OpenAlexW2113987164

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.