Evidence map›Paper›PMID 23249680›Full record

ArticleEpigenetics2013

The epigenome of AML stem and progenitor cells.

Jumpei Yamazaki, Marcos R Estecio, Yue Lu, Hai Long, Gabriel G Malouf, David Graber, Yujia Huo, Louis Ramagli, Shoudan Liang, Steven M Kornblau and 2 more

Abstract read
In one paragraph

Article in Epigenetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Review
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  7. Review
  8. Article
  9. Cancer stem cells and tumorigenesis.Biophysics reports · 2018
    Review
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  11. Article
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  13. Review
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jumpei YamazakiDepartment of Leukemia, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Marcos R Estecio
Yue Lu
Hai Long
Gabriel G Malouf
David Graber
Yujia Huo
Louis Ramagli
Shoudan Liang
Steven M Kornblau
Jaroslav Jelinek
Jean-Pierre J Issa

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
University of Texas M.D. Anderson Cancer SPORE-LeukemiaP50CA100632 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI KONOPLEVA, MARINA Y · 2003 to 2023
$43.7M
TOLERANCE INDUCTION BY MEGADOSE STEM CELL TRANSPLANTS IN CML--GVHD AND GVLP01CA049639 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI THALL, PETER F · 1990 to 2014
$41.8M
Randomized study of combined epigenetic therapyR01CA121104 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI ISSA, JEAN-PIERRE J. · 2007 to 2011
$1.5M
NCI NIH HHS CA046939NCI NIH HHS CA100632NCI NIH HHS CA121104NCI NIH HHS P01 CA049639NCI NIH HHS P30 CA016672NCI NIH HHS P50 CA100632NCI NIH HHS R01 CA121104
6 · The paper itself

Abstract

Acute myeloid leukemia (AML) is sustained by a population of cancer stem cells (CSCs or cancer-initiating cell). The mechanisms underlying switches from CSCs to non-CSCs in vivo remain to be understood. We address this issue in AML from the aspect of epigenetics using genome-wide screening for DNA methylation and selected histone modifications. We found no major differences in DNA methylation, especially in promoter CpG islands, between CSCs and non-CSCs. By contrast, we found thousands of genes that change H3K4me3 and/or H3K27me3 status between stem and progenitor cells as well as between progenitor and mature cells. Stem cell related pathways and proliferation or metabolism related pathways characterize genes differentially enriched for H3K4me3/H3K27me3 in stem and progenitor populations. Bivalent genes in stem cells are more plastic during differentiation and are more likely to lose H3K4me3 than to lose H3K27me3, consistent with increasingly closed chromatin state with differentiation. Our data indicates that histone modifications but not promoter DNA methylation are involved in switches from CSCs to non-CSCs in AML.

Indexed as

Epigenesis, GeneticCell DifferentiationChromatinChromatin ImmunoprecipitationCpG IslandsDNA MethylationGene Expression Regulation, LeukemicHistonesHumansLeukemia, Myeloid, AcuteNeoplastic Stem CellsOligonucleotide Array Sequence AnalysisProtein Processing, Post-TranslationalSequence Analysis, DNASignal TransductionChromatinHistonesAMLDNA methylationhistone modificationprogenitorstem

Identifiers

PMID23249680
PMCPMC3549884

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.