Evidence map›Paper›PMID 23248302›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Antibacterial drug leads targeting isoprenoid biosynthesis.

Wei Zhu, Yonghui Zhang, William Sinko, Mary E Hensler, Joshua Olson, Katie J Molohon, Steffen Lindert, Rong Cao, Kai Li, Ke Wang and 8 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 108 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. A fast-acting inhibitor of blood-stagebioRxiv : the preprint server for biology · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Escaping ESKAPE resistance:Royal Society open science · 2023
    Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 2 countries.

Wei ZhuCenter for Biophysics and Computational Biology, University of Illinois, Urbana, IL 61801, USA.
Yonghui Zhang
William Sinko
Mary E Hensler
Joshua Olson
Katie J Molohon
Steffen Lindert
Rong Cao
Kai Li
Ke Wang
Yang Wang
Yi-Liang Liu
Anna Sankovsky
César Augusto F de Oliveira
Douglas A Mitchell
Victor Nizet
J Andrew McCammon
Eric Oldfield
University of Illinois Urbana-Champaign · USInstitute of Molecular Biology and Biophysics · RUUniversity of Montana · USUniversity of California, San Diego · US

Funding

Vaccines and Therapies Against BotulismU54AI057153 · NIAID · UNIVERSITY OF CHICAGO · PI SHUMAN, HOWARD A · 2003 to 2013
$87.6M
THEORY OF BIOMOLECULAR DIFFUSIONR01GM031749 · NIGMS · UNIVERSITY OF HOUSTON · PI HUBER, GARY ALEXANDER, MCCAMMON, JAMES ANDREW · 1985 to 2022
$7.8M
MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008326 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KOMIVES, ELIZABETH A. · 1989 to 2020
$7.5M
Structure, Function and Inhibition of [4Fe-4S] ProteinsR01GM065307 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI OLDFIELD, ERIC · 2002 to 2017
$5.4M
TRAINING & OUTREACH COREU54HD071600 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BEST, BROOKIE MANNING · 2011 to 2015
$3.6M
Protein Structure/Function by NMR, Crystallography and Computational ChemistryR01AI074233 · NIAID · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI OLDFIELD, ERIC · 2008 to 2012
$1.8M
Next generation bisphosphonates for chemo- and immuno-therapyR01CA158191 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI OLDFIELD, ERIC · 2011 to 2015
$1.6M
Howard Hughes Medical InstituteNCI NIH HHS CA158191NCI NIH HHS R01 CA158191NIAID NIH HHS AI074233NIAID NIH HHS R01 AI074233NIAID NIH HHS U54 AI057153NICHD NIH HHS HD071600NICHD NIH HHS U54 HD071600NIGMS NIH HHS GM08326NIGMS NIH HHS GM31749NIGMS NIH HHS GM65307NIGMS NIH HHS R01 GM031749NIGMS NIH HHS R01 GM065307NIGMS NIH HHS T32 GM008326
6 · The paper itself

Abstract

With the rise in resistance to antibiotics such as methicillin, there is a need for new drugs. We report here the discovery and X-ray crystallographic structures of 10 chemically diverse compounds (benzoic, diketo, and phosphonic acids, as well as a bisamidine and a bisamine) that inhibit bacterial undecaprenyl diphosphate synthase, an essential enzyme involved in cell wall biosynthesis. The inhibitors bind to one or more of the four undecaprenyl diphosphate synthase inhibitor binding sites identified previously, with the most active leads binding to site 4, outside the catalytic center. The most potent leads are active against Staphylococcus aureus [minimal inhibitory concentration (MIC)(90) ∼0.25 µg/mL], and one potently synergizes with methicillin (fractional inhibitory concentration index = 0.25) and is protective in a mouse infection model. These results provide numerous leads for antibacterial development and open up the possibility of restoring sensitivity to drugs such as methicillin, using combination therapies.

Indexed as

Models, MolecularAlkyl and Aryl TransferasesAnimalsAnti-Bacterial AgentsBenzoatesBiosynthetic PathwaysCell WallCrystallography, X-RayDiphosphonatesDrug DiscoveryHigh-Throughput Screening AssaysMethicillinMiceMicrobial Sensitivity TestsMolecular StructurePyrrolidinonesAlkyl and Aryl TransferasesAnti-Bacterial AgentsBenzoatesDiphosphonatesMethicillinPyrrolidinonesTerpenestetramic acidundecaprenyl pyrophosphate synthetase

Identifiers

PMID23248302
PMCPMC3538244
OpenAlexW1966796830

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.