ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2013
Construction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria × ananassa) and its applicability.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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27 citing papers in PubMed, 65 citations in OpenAlex.
- Article
- Comparative QTL mapping for male sterility of cultivated strawberry (Breeding science · 2021Article
- Strawberry fruit shape: quantification by image analysis and QTL detection by genome-wide association analysis.Breeding science · 2021Article
- Chromosome Level Assembly of Homozygous Inbred Line 'Wongyo 3115' Facilitates the Construction of a High-Density Linkage Map and Identification of QTLs Associated With Fruit Firmness in Octoploid Strawberry (Frontiers in plant science · 2021Article
- ddRAD-seq derived genome-wide SNPs, high density linkage map and QTLs for fruit quality traits in strawberry (3 Biotech · 2020Article
- DNA markers based on retrotransposon insertion polymorphisms can detect short DNA fragments for strawberry cultivar identification.Breeding science · 2020Article
- A pentaploid-based linkage map of the ancestral octoploid strawberryHorticulture research · 2020Article
- Molecular karyotypes of loquat (Plant methods · 2020Article
- De novo whole-genome assembly in Chrysanthemum seticuspe, a model species of Chrysanthemums, and its application to genetic and gene discovery analysis.DNA research : an international journal for rapid publication of reports on genes and genomes · 2019Article
- High density linkage map construction and QTL mapping for runner production in allo-octoploid strawberry Fragaria × ananassa based on ddRAD-seq derived SNPs.Scientific reports · 2019Article
- Development and characterization of a strawberry MAGIC population derived from crosses with six strawberry cultivars.Breeding science · 2017Article
- Discrimination of candidate subgenome-specific loci by linkage map construction with an SBMC genomics · 2017Article
- Population genetic analysis of a global collection of Fragaria vesca using microsatellite markers.PloS one · 2017Article
- Genotyping-by-sequencing enables linkage mapping in three octoploid cultivated strawberry families.PeerJ · 2017Article
- Article
- Narrowing down the single homoeologous FaPFRU locus controlling flowering in cultivated octoploid strawberry using a selective mapping strategy.Plant biotechnology journal · 2016Article
- High-density linkage mapping and distribution of segregation distortion regions in the oak genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016Article
- Article
- Article
- Mapping QTL associated with Verticillium dahliae resistance in the cultivated strawberry (Fragaria × ananassa).Horticulture research · 2015Article
Corrections and comments
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Authors and funding
29 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The cultivated strawberry (Fragaria × ananassa) is an octoploid (2n = 8x = 56) of the Rosaceae family whose genomic architecture is still controversial. Several recent studies support the AAA'A'BBB'B' model, but its complexity has hindered genetic and genomic analysis of this important crop. To overcome this difficulty and to assist genome-wide analysis of F. × ananassa, we constructed an integrated linkage map by organizing a total of 4474 of simple sequence repeat (SSR) markers collected from published Fragaria sequences, including 3746 SSR markers [Fragaria vesca expressed sequence tag (EST)-derived SSR markers] derived from F. vesca ESTs, 603 markers (F. × ananassa EST-derived SSR markers) from F. × ananassa ESTs, and 125 markers (F. × ananassa transcriptome-derived SSR markers) from F. × ananassa transcripts. Along with the previously published SSR markers, these markers were mapped onto five parent-specific linkage maps derived from three mapping populations, which were then assembled into an integrated linkage map. The constructed map consists of 1856 loci in 28 linkage groups (LGs) that total 2364.1 cM in length. Macrosynteny at the chromosome level was observed between the LGs of F. × ananassa and the genome of F. vesca. Variety distinction on 129 F. × ananassa lines was demonstrated using 45 selected SSR markers.
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