Evidence map›Paper›PMID 23246794›Full record

ArticleGenome biology and evolution2013

Natural genome diversity of AI-2 quorum sensing in Escherichia coli: conserved signal production but labile signal reception.

Patrícia H Brito, Eduardo P C Rocha, Karina B Xavier, Isabel Gordo

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.6field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 3 countries.

Patrícia H BritoInstituto Gulbenkian de Ciência, Oeiras, Portugal. pbrito@igc.gulbenkian.pt
Eduardo P C Rocha
Karina B Xavier
Isabel Gordo
Instituto Gulbenkian de Ciência · PTInstitut Pasteur · FR

Funding

European Research Council 260421European Research Council 281605Howard Hughes Medical Institute 55007436
6 · The paper itself

Abstract

Quorum sensing (QS) regulates the onset of bacterial social responses in function to cell density having an important impact in virulence. Autoinducer-2 (AI-2) is a signal that has the peculiarity of mediating both intra- and interspecies bacterial QS. We analyzed the diversity of all components of AI-2 QS across 44 complete genomes of Escherichia coli and Shigella strains. We used phylogenetic tools to study its evolution and determined the phenotypes of single-deletion mutants to predict phenotypes of natural strains. Our analysis revealed many likely adaptive polymorphisms both in gene content and in nucleotide sequence. We show that all natural strains possess the signal emitter (the luxS gene), but many lack a functional signal receptor (complete lsr operon) and the ability to regulate extracellular signal concentrations. This result is in striking contrast with the canonical species-specific QS systems where one often finds orphan receptors, without a cognate synthase, but not orphan emitters. Our analysis indicates that selection actively maintains a balanced polymorphism for the presence/absence of a functional lsr operon suggesting diversifying selection on the regulation of signal accumulation and recognition. These results can be explained either by niche-specific adaptation or by selection for a coercive behavior where signal-blind emitters benefit from forcing other individuals in the population to haste in cooperative behaviors.

Indexed as

Genome, BacterialPolymorphism, GeneticQuorum SensingAdaptation, PhysiologicalBacterial ProteinsCarbon-Sulfur LyasesEscherichia coliEscherichia coli ProteinsEvolution, MolecularGene DeletionMutationOperonPhenotypePhylogenyRepressor ProteinsSelection, GeneticBacterial ProteinsCarbon-Sulfur LyasesEscherichia coli ProteinsLsrR protein, E coliLuxS protein, BacteriaRepressor Proteins

Identifiers

PMID23246794
PMCPMC3595036
OpenAlexW2141242752

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.