Evidence map›Paper›PMID 23246446›Full record

ArticleBiochimica et biophysica acta2013

Does the lipid environment impact the open-state conductance of an engineered β-barrel protein nanopore?

Noriko Tomita, Mohammad M Mohammad, David J Niedzwiecki, Makoto Ohta, Liviu Movileanu

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Microsecond-timescale simulations suggest 5-HT-mediated preactivation of the 5-HTProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  5. Article
  6. Quantification of Membrane Protein-Detergent Complex Interactions.The journal of physical chemistry. B · 2017
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Noriko TomitaDepartment of Physics, Syracuse University, Syracuse, NY, USA.
Mohammad M Mohammad
David J Niedzwiecki
Makoto Ohta
Liviu Movileanu

Funding

Engineered Nanopores for Single-Molecule Stochastic SensingR01GM088403 · NIGMS · SYRACUSE UNIVERSITY · PI MOVILEANU, LIVIU · 2009 to 2022
$3.8M
NIGMS NIH HHS R01 GM088403
6 · The paper itself

Abstract

Using rational membrane protein design, we were recently able to obtain a β-barrel protein nanopore that was robust under an unusually broad range of experimental circumstances. This protein nanopore was based upon the native scaffold of the bacterial ferric hydroxamate uptake component A (FhuA) of Escherichia coli. In this work, we expanded the examinations of the open-state current of this engineered protein nanopore, also called FhuA ΔC/Δ4L, employing an array of lipid bilayer systems that contained charged and uncharged as well as conical and cylindrical lipids. Remarkably, systematical single-channel analysis of FhuA ΔC/Δ4L indicated that most of its biophysical features, such as the unitary conductance and the stability of the open-state current, were not altered under the conditions tested in this work. However, electrical recordings at high transmembrane potentials revealed that the presence of conical phospholipids within the bilayer catalyzes the first, stepwise current transition of the FhuA ΔC/Δ4L protein nanopore to a lower-conductance open state. This study reinforces the stability of the open-state current of the engineered FhuA ΔC/Δ4L protein nanopore under various experimental conditions, paving the way for further critical developments in biosensing and molecular biomedical diagnosis.

Indexed as

NanoporesBacterial Outer Membrane ProteinsBiophysicsBiosensing TechniquesElectric ConductivityElectrophysiologyEscherichia coliEscherichia coli ProteinsHydrogen-Ion ConcentrationLipid BilayersLipidsMembrane PotentialsMolecular ConformationNanoparticlesNanotechnologyProtein EngineeringBacterial Outer Membrane ProteinsEscherichia coli ProteinsFhuA protein, E coliLipid BilayersLipids

Identifiers

PMID23246446
PMCPMC3560310

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.