Evidence map›Paper›PMID 23246289›Full record

SynthesisAmerican journal of human genetics2013

Gain-of-function lipoprotein lipase variant rs13702 modulates lipid traits through disruption of a microRNA-410 seed site.

Kris Richardson, Jennifer A Nettleton, Noemi Rotllan, Toshiko Tanaka, Caren E Smith, Chao-Qiang Lai, Laurence D Parnell, Yu-Chi Lee, Jari Lahti, Rozenn N Lemaitre and 36 more

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in American journal of human genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 74 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Genetics of Hypertriglyceridemia.Frontiers in endocrinology · 2020
    Review
  13. Article
  14. The Post-GWAS Era: From Association to Function.American journal of human genetics · 2018
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

46 authors at 20 institutions in 5 countries.

Kris RichardsonNutrition and Genomics Laboratory, Jean Mayer United States Department of Agriculture Human Nutrition Research Center on Aging at Tufts University, Boston, MA 02111, USA. kris.richardson@ars.usda.gov
Jennifer A Nettleton
Noemi Rotllan
Toshiko Tanaka
Caren E Smith
Chao-Qiang Lai
Laurence D Parnell
Yu-Chi Lee
Jari Lahti
Rozenn N Lemaitre
Ani Manichaikul
Margaux Keller
Vera Mikkilä
Julius Ngwa
Frank J A van Rooij
Christie M Ballentyne
Ingrid B Borecki
L Adrienne Cupples
Melissa Garcia
Albert Hofman
Luigi Ferrucci
Dariush Mozaffarian
Mia-Maria Perälä
Olli Raitakari
Russell P Tracy
Donna K Arnett
Stefania Bandinelli
Eric Boerwinkle
Johan G Eriksson
Oscar H Franco
Mika Kähönen
Michael Nalls
David S Siscovick
Denise K Houston
Bruce M Psaty
Jorma Viikari
Jacqueline C M Witteman
Mark O Goodarzi
Terho Lehtimäki
Yongmei Liu
M Carola Zillikens
Yii-Der I Chen
André G Uitterlinden
Jerome I Rotter
Carlos Fernandez-Hernando
Jose M Ordovas
National Institute on Aging · USTufts University · USCedars-Sinai Medical Center · USErasmus MC · NLNetherlands Consortium for Healthy Ageing · NLBoston University · USFinnish Institute for Health and Welfare · FINew York University · USThe University of Texas Health Science Center at Houston · USUniversity of Helsinki · FIUniversity of Turku · FIUniversity of Washington · USWake Forest University · USAzienda Sanitaria di Firenze · ITBaylor College of Medicine · USBrigham and Women's Hospital · USJean Mayer Human Nutrition Research Center on Aging · USKaiser Permanente Washington Health Research Institute · USNational Institutes of Health · USTampere University · FI

Funding

UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PETER J TONTONOZ · 2003 to 2026
$40.4M
Genetic and Environmental Determinants of TriglyceridesU01HL072524 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI ARNETT, DONNA K · 2002 to 2008
$11.9M
CHARGE Consortium: Omics Discovery for CVD and Aging PhenotypesR01HL105756 · NHLBI · UNIVERSITY OF WASHINGTON · PI Bruce M Psaty, NICHOLAS L SMITH · 2011 to 2026
$9.5M
Genomewide Association Study of Lipid Response to Fenofibrate and Dietary FatR01HL091357 · NHLBI · UNIVERSITY OF KENTUCKY · PI ARNETT, DONNA K · 2008 to 2018
$5.8M
The Aging Genome Association Study "AGE-GAIN"ZIAAG000965 · NIA · NATIONAL INSTITUTE ON AGING · PI FERRUCCI, LUIGI · 2009 to 2025
$4.0M
NCATS NIH HHS UL1 TR000124NHLBI NIH HHS R01 HL091357NHLBI NIH HHS R01 HL105756NHLBI NIH HHS U01 HL072524NIDDK NIH HHS P30 DK063491NIMHD NIH HHS L60 MD003562
6 · The paper itself

Abstract

Genome-wide association studies (GWAS) have identified hundreds of genetic variants that are associated with lipid phenotypes. However, data supporting a functional role for these variants in the context of lipid metabolism are scarce. We investigated the association of the lipoprotein lipase (LPL) variant rs13702 with plasma lipids and explored its potential for functionality. The rs13702 minor allele had been predicted to disrupt a microRNA (miR) recognition element (MRE) seed site (MRESS) for the human microRNA-410 (miR-410). Furthermore, rs13702 is in linkage disequilibrium (LD) with several SNPs identified by GWAS. We performed a meta-analysis across ten cohorts of participants that showed a statistically significant association of rs13702 with triacylglycerols (TAG) (p = 3.18 × 10(-42)) and high-density lipoprotein cholesterol (HDL-C) (p = 1.35 × 10(-32)) with each copy of the minor allele associated with 0.060 mmol/l lower TAG and 0.041 mmol/l higher HDL-C. Our data showed that an LPL 3' UTR luciferase reporter carrying the rs13702 major T allele was reduced by 40% in response to a miR-410 mimic. We also evaluated the interaction between intake of dietary fatty acids and rs13702. Meta-analysis demonstrated a significant interaction between rs13702 and dietary polyunsaturated fatty acid (PUFA) with respect to TAG concentrations (p = 0.00153), with the magnitude of the inverse association between dietary PUFA intake and TAG concentration showing -0.007 mmol/l greater reduction. Our results suggest that rs13702 induces the allele-specific regulation of LPL by miR-410 in humans. This work provides biological and potential clinical relevance for previously reported GWAS variants associated with plasma lipid phenotypes.

Indexed as

Polymorphism, Single NucleotideCholesterol, HDLDietary FatsGene Expression RegulationHumansLinkage DisequilibriumLipid MetabolismLipidsLipoprotein LipaseMicroRNAsTriglyceridesCholesterol, HDLDietary FatsLipidsLipoprotein LipaseMicroRNAsMIRN410 microRNA, humanTriglycerides

Identifiers

PMID23246289
PMCPMC3542456
OpenAlexW2072735166

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.