Evidence map›Paper›PMID 23245831›Full record

ArticleThe American journal of pathology2013

Depletion of deoxyribonucleotide pools is an endogenous source of DNA damage in cells undergoing oncogene-induced senescence.

Sudha Mannava, Kalyana C Moparthy, Linda J Wheeler, Venkatesh Natarajan, Shoshanna N Zucker, Emily E Fink, Michael Im, Sheryl Flanagan, William C Burhans, Nathalie C Zeitouni and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The American journal of pathology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 77 citations in OpenAlex.

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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Sudha MannavaDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, New York 14263, USA.
Kalyana C Moparthy
Linda J Wheeler
Venkatesh Natarajan
Shoshanna N Zucker
Emily E Fink
Michael Im
Sheryl Flanagan
William C Burhans
Nathalie C Zeitouni
Donna S Shewach
Christopher K Mathews
Mikhail A Nikiforov
Roswell Park Comprehensive Cancer Center · USUniversity of Michigan–Ann Arbor · USOregon State University · US

Funding

Oncogene c-Myc-dependent pathways in cutaneous melanoma03R01CA120244 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NIKIFOROV, MIKHAIL · 2007 to 2016
$3.3M
Mechanisms of Cytotoxicity and Radiosensitization for AntimetabolitesR01CA083081 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHEWACH, DONNA S. · 1999 to 2014
$3.2M
Mitochondrial deoxynucleotide metabolism and diseaseR01GM073744 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI SAMUELS, DAVID C · 2007 to 2011
$1.4M
NCI NIH HHS R01 CA083081NCI NIH HHS R01 CA120244NIGMS NIH HHS R01 GM073744
6 · The paper itself

Abstract

In normal human cells, oncogene-induced senescence (OIS) depends on induction of DNA damage response. Oxidative stress and hyperreplication of genomic DNA have been proposed as major causes of DNA damage in OIS cells. Here, we report that down-regulation of deoxyribonucleoside pools is another endogenous source of DNA damage in normal human fibroblasts (NHFs) undergoing HRAS(G12V)-induced senescence. NHF-HRAS(G12V) cells underexpressed thymidylate synthase (TS) and ribonucleotide reductase (RR), two enzymes required for the entire de novo deoxyribonucleotide biosynthesis, and possessed low dNTP levels. Chromatin at the promoters of the genes encoding TS and RR was enriched with retinoblastoma tumor suppressor protein and histone H3 tri-methylated at lysine 9. Importantly, ectopic coexpression of TS and RR or addition of deoxyribonucleosides substantially suppressed DNA damage, senescence-associated phenotypes, and proliferation arrest in two types of NHF-expressing HRAS(G12V). Reciprocally, short hairpin RNA-mediated suppression of TS and RR caused DNA damage and senescence in NHFs, although less efficiently than HRAS(G12V). However, overexpression of TS and RR in quiescent NHFs did not overcome proliferation arrest, suggesting that unlike quiescence, OIS requires depletion of dNTP pools and activated DNA replication. Our data identify a previously unknown role of deoxyribonucleotides in regulation of OIS.

Indexed as

Cell ProliferationCells, CulturedCellular SenescenceDeoxyribonucleotidesDNA DamageDNA ReplicationFibroblastsHumansOncogenesProto-Oncogene Proteins p21(ras)Ribonucleotide ReductasesThymidylate SynthaseDeoxyribonucleotidesHRAS protein, humanProto-Oncogene Proteins p21(ras)Ribonucleotide ReductasesThymidylate Synthase

Identifiers

PMID23245831
PMCPMC3532713
OpenAlexW2043233135

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.