ArticleBMC genomics2012
Genetic architecture of complex agronomic traits examined in two testcross populations of rye (Secale cereale L.).
Article in BMC genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
30 citing papers in PubMed, 69 citations in OpenAlex.
- Cytological and genetic effects of rye chromosomes 1RS and 3R on the wheat-breeding founder parent Chuanmai 42 from southwestern China.Molecular breeding : new strategies in plant improvement · 2023Article
- Construction of a high-density genetic map and mapping of a spike length locus for rye.PloS one · 2023Article
- Improving Yield and Yield Stability in Winter Rye by Hybrid Breeding.Plants (Basel, Switzerland) · 2022Review
- Integration of DNA Methylation and Transcriptome Data Improves Complex Trait Prediction inPlants (Basel, Switzerland) · 2022Article
- A mechanistic view on lodging resistance in rye and wheat: a multiscale comparative study.Plant biotechnology journal · 2021Article
- A ddRADseq Survey of the Genetic Diversity of Rye (Plants (Basel, Switzerland) · 2021Article
- Mapping and validating stem rust resistance genes directly in self-incompatible genetic resources of winter rye.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- A Genome-Wide Association Study Pinpoints Quantitative Trait Genes for Plant Height, Heading Date, Grain Quality, and Yield in Rye (Frontiers in plant science · 2021Article
- A complex network of QTL for thousand-kernel weight in the rye genome.Journal of applied genetics · 2020Article
- Genomics-assisted breeding in minor and pseudo-cereals.Breeding science · 2020Article
- Mapping Stem Rust (Frontiers in plant science · 2020Article
- Gene Expression Profiling and Fine Mapping Identifies a Gibberellin 2-Oxidase Gene Co-segregating With the Dominant Dwarfing GeneFrontiers in plant science · 2019Article
- Populations of doubled haploids for genetic mapping in hexaploid winter triticale.Molecular breeding : new strategies in plant improvement · 2018Article
- Identification of a novel, dominant dwarfing gene (Ddw4) and its effect on morphological traits of rye.PloS one · 2018Article
- QTL mapping and comparative genome analysis of agronomic traits including grain yield in winter rye.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Development of SSR markers and identification of major quantitative trait loci controlling shelling percentage in cultivated peanut (Arachis hypogaea L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Comparative analysis of genetic architectures for nine developmental traits of rye.Journal of applied genetics · 2017Article
- Breeding progress, variation, and correlation of grain and quality traits in winter rye hybrid and population varieties and national on-farm progress in Germany over 26 years.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Model training across multiple breeding cycles significantly improves genomic prediction accuracy in rye (Secale cereale L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
- Multiple-trait- and selection indices-genomic predictions for grain yield and protein content in rye for feeding purposes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundRye is an important European crop used for food, feed, and bioenergy. Several quality and yield-related traits are of agronomic relevance for rye breeding programs. Profound knowledge of the genetic architecture of these traits is needed to successfully implement marker-assisted selection programs. Nevertheless, little is known on quantitative loci underlying important agronomic traits in rye.
resultsWe used 440 F(3:4) inbred lines from two biparental populations (Pop-A, Pop-B) fingerprinted with about 800 to 900 SNP, SSR and/or DArT markers and outcrossed them to a tester for phenotyping. The resulting hybrids and their parents were evaluated for grain yield, single-ear weight, test weight, plant height, thousand-kernel weight, falling number, protein, starch, soluble and total pentosan contents in up to ten environments in Central Europe. The quality of the phenotypic data was high reflected by moderate to high heritability estimates. QTL analyses revealed a total of 31 QTL for Pop-A and 52 for Pop-B. QTL x environment interactions were significant (P < 0.01) in most cases but variance of QTL main effect was more prominent.
conclusionsQTL mapping was successfully applied based on two segregating rye populations. QTL underlying grain yield and several quality traits had small effects. In contrast, thousand-kernel weight, test weight, falling number and starch content were affected by several major QTL with a high frequency of occurrence in cross validation. These QTL explaining a large proportion of the genotypic variance can be exploited in marker-assisted selection programs and are candidates for further genetic dissection.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.