ArticleJournal of biomedical semantics2012
COEUS: "semantic web in a box" for biomedical applications.
Article in Journal of biomedical semantics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
9 citing papers in PubMed.
- Interoperability of population-based patient registries.Journal of biomedical informatics: X · 2020Article
- Review of Statistical Learning Methods in Integrated Omics Studies (An Integrated Information Science).Bioinformatics and biology insights · 2018Review
- SCALEUS: Semantic Web Services Integration for Biomedical Applications.Journal of medical systems · 2017Article
- Linked Registries: Connecting Rare Diseases Patient Registries through a Semantic Web Layer.BioMed research international · 2017Article
- A semantic-based workflow for biomedical literature annotation.Database : the journal of biological databases and curation · 2017Article
- An automated real-time integration and interoperability framework for bioinformatics.BMC bioinformatics · 2015Article
- SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases.BMC bioinformatics · 2014Article
- RD-Connect: an integrated platform connecting databases, registries, biobanks and clinical bioinformatics for rare disease research.Journal of general internal medicine · 2014Review
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
unlabelled
backgroundAs the "omics" revolution unfolds, the growth in data quantity and diversity is bringing about the need for pioneering bioinformatics software, capable of significantly improving the research workflow. To cope with these computer science demands, biomedical software engineers are adopting emerging semantic web technologies that better suit the life sciences domain. The latter's complex relationships are easily mapped into semantic web graphs, enabling a superior understanding of collected knowledge. Despite increased awareness of semantic web technologies in bioinformatics, their use is still limited.
resultsCOEUS is a new semantic web framework, aiming at a streamlined application development cycle and following a "semantic web in a box" approach. The framework provides a single package including advanced data integration and triplification tools, base ontologies, a web-oriented engine and a flexible exploration API. Resources can be integrated from heterogeneous sources, including CSV and XML files or SQL and SPARQL query results, and mapped directly to one or more ontologies. Advanced interoperability features include REST services, a SPARQL endpoint and LinkedData publication. These enable the creation of multiple applications for web, desktop or mobile environments, and empower a new knowledge federation layer.
conclusionsThe platform, targeted at biomedical application developers, provides a complete skeleton ready for rapid application deployment, enhancing the creation of new semantic information systems. COEUS is available as open source at http://bioinformatics.ua.pt/coeus/.
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.