Evidence map›Paper›PMID 23242994›Full record

ArticleMolecular biology of the cell2013

A genome-wide transcriptional analysis of morphology determination in Candida albicans.

Patricia L Carlisle, David Kadosh

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Roles of P-body factors inbioRxiv : the preprint server for biology · 2025
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  12. Synergism ofFrontiers in cellular and infection microbiology · 2020
    Article
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  14. Article
  15. Article
  16. Review
  17. Synergistic Effect of Quinic Acid Derived FromFrontiers in microbiology · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Patricia L CarlisleDepartment of Microbiology and Immunology, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229-3900, USA.
David Kadosh

Funding

Institutional Research Training GrantT32DE014318 · NIDCR · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Kenneth M Hargreaves · 2002 to 2026
$12.1M
Determination of morphology and virulence in Candida albicansR01AI083344 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI KADOSH, DAVID · 2010 to 2014
$1.8M
Determining Genetic and Molecular Mechanisms that Specify C. albicans MorphologyF31DE020214 · NIDCR · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CARLISLE, PATRICIA LYNN · 2009 to 2011
$69k
NIAID NIH HHS 5R01AI083344-03NIAID NIH HHS R01 AI083344NIDCR NIH HHS 5F31DE020214-03NIDCR NIH HHS F31 DE020214NIDCR NIH HHS T32 DE014318NIDCR NIH HHS T32DE14318-07
6 · The paper itself

Abstract

Candida albicans, the most common cause of human fungal infections, undergoes a reversible morphological transition from yeast to pseudohyphal and hyphal filaments, which is required for virulence. For many years, the relationship among global gene expression patterns associated with determination of specific C. albicans morphologies has remained obscure. Using a strain that can be genetically manipulated to sequentially transition from yeast to pseudohyphae to hyphae in the absence of complex environmental cues and upstream signaling pathways, we demonstrate by whole-genome transcriptional profiling that genes associated with pseudohyphae represent a subset of those associated with hyphae and are generally expressed at lower levels. Our results also strongly suggest that in addition to dosage, extended duration of filament-specific gene expression is sufficient to drive the C. albicans yeast-pseudohyphal-hyphal transition. Finally, we describe the first transcriptional profile of the C. albicans reverse hyphal-pseudohyphal-yeast transition and demonstrate that this transition involves not only down-regulation of known hyphal-specific, genes but also differential expression of additional genes that have not previously been associated with the forward transition, including many involved in protein synthesis. These findings provide new insight into genome-wide expression patterns important for determining fungal morphology and suggest that in addition to similarities, there are also fundamental differences in global gene expression as pathogenic filamentous fungi undergo forward and reverse morphological transitions.

Indexed as

TranscriptomeBiosynthetic PathwaysCandida albicansCluster AnalysisFungal ProteinsGene Expression ProfilingGene Expression Regulation, FungalGenome, FungalHyphaeMorphogenesisProtein BiosynthesisTranscription FactorsFungal ProteinsTranscription Factors

Identifiers

PMID23242994
PMCPMC3564527

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.