Evidence map›Paper›PMID 23242554›Full record

ArticleMolecular & cellular proteomics : MCP2013

Identification of CRM1-dependent Nuclear Export Cargos Using Quantitative Mass Spectrometry.

Ketan Thakar, Samir Karaca, Sarah A Port, Henning Urlaub, Ralph H Kehlenbach

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 109 citations in OpenAlex.

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  15. Nuclear transport proteins: structure, function, and disease relevance.Signal transduction and targeted therapy · 2023
    Review
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  17. Article
  18. Review
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8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ketan ThakarDepartment of Biochemistry I, Faculty of Medicine, Georg-August-University of Göttingen, Humboldtallee 23, Göttingen, Germany.
Samir Karaca
Sarah A Port
Henning Urlaub
Ralph H Kehlenbach
University of Göttingen · DEMax Planck Institute for Biophysical Chemistry · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromosome region maintenance 1/exportin1/Exp1/Xpo1 (CRM1) is the major transport receptor for the export of proteins from the nucleus. It binds to nuclear export signals (NESs) that are rich in leucines and other hydrophobic amino acids. The prediction of NESs is difficult because of the extreme recognition flexibility of CRM1. Furthermore, proteins can be exported upon binding to an NES-containing adaptor protein. Here we present an approach for identifying targets of the CRM1-export pathway via quantitative mass spectrometry using stable isotope labeling with amino acids in cell culture. With this approach, we identified >100 proteins from HeLa cells that were depleted from cytosolic fractions and/or enriched in nuclear fractions in the presence of the selective CRM1-inhibitor leptomycin B. Novel and validated substrates are the polyubiquitin-binding protein sequestosome 1, the cancerous inhibitor of protein phosphatase 2A (PP2A), the guanine nucleotide-binding protein-like 3-like protein, the programmed cell death protein 2-like protein, and the cytosolic carboxypeptidase 1 (CCP1). We identified a functional NES in CCP1 that mediates direct binding to the export receptor CRM1. The method will be applicable to other nucleocytoplasmic transport pathways, as well as to the analysis of nucleocytoplasmic shuttling proteins under different growth conditions.

Indexed as

Active Transport, Cell NucleusAdaptor Proteins, Signal TransducingCarboxypeptidasesCell NucleusExportin 1 ProteinFatty Acids, UnsaturatedGTP-Binding ProteinsHeLa CellsHumansImmunoblottingKaryopherinsLuminescent ProteinsMass SpectrometryMicroscopy, ConfocalMicroscopy, FluorescenceNuclear Export SignalsAdaptor Proteins, Signal TransducingAGTPBP1 protein, humanCarboxypeptidasesExportin 1 ProteinFatty Acids, UnsaturatedGTP-Binding ProteinsKaryopherinsleptomycin BLuminescent ProteinsNuclear Export SignalsProtein Phosphatase 2Receptors, Cytoplasmic and NuclearRecombinant Fusion ProteinsSequestosome-1 ProteinSerine-Type D-Ala-D-Ala CarboxypeptidaseSQSTM1 protein, human

Identifiers

PMID23242554
PMCPMC3591659
OpenAlexW2152964044

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.