Evidence map›Paper›PMID 23242139›Full record

ArticleNature2013

Mosaic PPM1D mutations are associated with predisposition to breast and ovarian cancer.

Elise Ruark, Katie Snape, Peter Humburg, Chey Loveday, Ilirjana Bajrami, Rachel Brough, Daniel Nava Rodrigues, Anthony Renwick, Sheila Seal, Emma Ramsay and 54 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 153 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
153citing papers in PubMed, 1 pooled it
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

153 citing papers in PubMed, 1 synthesis or guideline pooled it, 257 citations in OpenAlex.

  1. ASSOCIATION OF MTHFR A1298C POLYMORPHISM WITH BREAST CANCER AND/OR OVARIAN CANCER RISK: AN UPDATED META-ANALYSIS.African journal of traditional, complementary, and alternative medicines : AJTCAM · 2016
    Pooled it
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  11. eLife · 2024
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  15. bioRxiv : the preprint server for biology · 2024
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  19. A Case Study on PPM1D and 9 Other Shared Germline Alterations in a Family.Asian Pacific journal of cancer prevention : APJCP · 2023
    Article
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93 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

64 authors at 20 institutions in 2 countries.

Elise RuarkDivision of Genetics & Epidemiology, The Institute of Cancer Research, Sutton SM2 5NG, UK.
Katie Snape
Peter Humburg
Chey Loveday
Ilirjana Bajrami
Rachel Brough
Daniel Nava Rodrigues
Anthony Renwick
Sheila Seal
Emma Ramsay
Silvana Del Vecchio Duarte
Manuel A Rivas
Margaret Warren-Perry
Anna Zachariou
Adriana Campion-Flora
Sandra Hanks
Anne Murray
Naser Ansari Pour
Jenny Douglas
Lorna Gregory
Andrew Rimmer
Neil M Walker
Tsun-Po Yang
Julian W Adlard
Julian Barwell
Jonathan Berg
Angela F Brady
Carole Brewer
Glen Brice
Cyril Chapman
Jackie Cook
Rosemarie Davidson
Alan Donaldson
Fiona Douglas
Diana Eccles
D Gareth Evans
Lynn Greenhalgh
Alex Henderson
Louise Izatt
Ajith Kumar
Fiona Lalloo
Zosia Miedzybrodzka
Patrick J Morrison
Joan Paterson
Mary Porteous
Mark T Rogers
Susan Shanley
Lisa Walker
Martin Gore
Richard Houlston
Matthew A Brown
Mark J Caufield
Panagiotis Deloukas
Mark I McCarthy
John A Todd
Breast and Ovarian Cancer Susceptibility Collaboration
Wellcome Trust Case Control Consortium
Clare Turnbull
Jorge S Reis-Filho
Alan Ashworth
Antonis C Antoniou
Christopher J Lord
Peter Donnelly
Nazneen Rahman
Institute of Cancer Research · GBBreast Cancer Now · GBUniversity of Oxford · GBRoyal Marsden NHS Foundation Trust · GBNewcastle upon Tyne Hospitals NHS Foundation Trust · GBWellcome Sanger Institute · GBAddenbrooke's Hospital · GBBirmingham Women's Hospital · GBCambridge University Hospitals NHS Foundation Trust · GBCentre for Human Genetics · GBChapel Allerton Hospital · GBGreat Ormond Street Hospital · GBGuy's and St Thomas' NHS Foundation Trust · GBJuvenile Diabetes Research Foundation · GBManchester Academic Health Science Centre · GBOxford BioMedica (United Kingdom) · GBOxford University Hospitals NHS Trust · GBQueen Mary University of London · GBQueen's University Belfast · GBRoyal Devon and Exeter Hospital · GB

Funding

Breast Cancer Now BREAST CANCER NOW RESEARCH CENTRECancer Research UK 11174Cancer Research UK 14276Cancer Research UK 15106Cancer Research UK C12292/A11174Chief Scientist Office CZB/4/540Chief Scientist Office ETM/137Chief Scientist Office ETM/75Medical Research Council G0000934Medical Research Council G0600329Medical Research Council G0700491Medical Research Council G0800675Medical Research Council G0800759Medical Research Council G0900747Medical Research Council G0900747 91070Medical Research Council G9521010Medical Research Council MR/K006584/1Wellcome Trust 068545/Z/02Wellcome Trust 083948Wellcome Trust 090532Wellcome Trust 090532/Z/09/ZWellcome Trust 091157Wellcome Trust 095552Wellcome Trust 098051Wellcome Trust 100140
6 · The paper itself

Abstract

Improved sequencing technologies offer unprecedented opportunities for investigating the role of rare genetic variation in common disease. However, there are considerable challenges with respect to study design, data analysis and replication. Using pooled next-generation sequencing of 507 genes implicated in the repair of DNA in 1,150 samples, an analytical strategy focused on protein-truncating variants (PTVs) and a large-scale sequencing case-control replication experiment in 13,642 individuals, here we show that rare PTVs in the p53-inducible protein phosphatase PPM1D are associated with predisposition to breast cancer and ovarian cancer. PPM1D PTV mutations were present in 25 out of 7,781 cases versus 1 out of 5,861 controls (P = 1.12 × 10(-5)), including 18 mutations in 6,912 individuals with breast cancer (P = 2.42 × 10(-4)) and 12 mutations in 1,121 individuals with ovarian cancer (P = 3.10 × 10(-9)). Notably, all of the identified PPM1D PTVs were mosaic in lymphocyte DNA and clustered within a 370-base-pair region in the final exon of the gene, carboxy-terminal to the phosphatase catalytic domain. Functional studies demonstrate that the mutations result in enhanced suppression of p53 in response to ionizing radiation exposure, suggesting that the mutant alleles encode hyperactive PPM1D isoforms. Thus, although the mutations cause premature protein truncation, they do not result in the simple loss-of-function effect typically associated with this class of variant, but instead probably have a gain-of-function effect. Our results have implications for the detection and management of breast and ovarian cancer risk. More generally, these data provide new insights into the role of rare and of mosaic genetic variants in common conditions, and the use of sequencing in their identification.

Indexed as

MosaicismMutationAllelesBreast NeoplasmsCluster AnalysisExonsFemaleGenetic Predisposition to DiseaseHumansIsoenzymesLymphocytesOvarian NeoplasmsPhosphoprotein PhosphatasesProtein Phosphatase 2CSequence Analysis, DNATumor Suppressor Protein p53IsoenzymesPhosphoprotein PhosphatasesPPM1D protein, humanProtein Phosphatase 2CTumor Suppressor Protein p53

Identifiers

PMID23242139
PMCPMC3759028
OpenAlexW2169024565

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.