Evidence map›Paper›PMID 23239883›Full record

ArticleThe Journal of biological chemistry2013

Molecular architecture and functional analysis of NetB, a pore-forming toxin from Clostridium perfringens.

Christos G Savva, Sérgio P Fernandes da Costa, Monika Bokori-Brown, Claire E Naylor, Ambrose R Cole, David S Moss, Richard W Titball, Ajit K Basak

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 106 citations in OpenAlex.

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  14. Bacterial pore-forming toxins.Microbiology (Reading, England) · 2022
    Article
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  16. Toxigenic Profile ofComparative medicine · 2022
    Article
  17. Article
  18. Role ofVaccines · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Christos G SavvaDepartment of Biological Sciences, School of Crystallography, Institute of Structural and Molecular Biology, Birkbeck College, Malet Street, London, WC1E 7HX, United Kingdom.
Sérgio P Fernandes da Costa
Monika Bokori-Brown
Claire E Naylor
Ambrose R Cole
David S Moss
Richard W Titball
Ajit K Basak
Institute of Structural and Molecular Biology · GBUniversity of Exeter · GBBirkbeck, University of London · GB

Funding

Wellcome TrustWellcome Trust 089618MA
6 · The paper itself

Abstract

NetB is a pore-forming toxin produced by Clostridium perfringens and has been reported to play a major role in the pathogenesis of avian necrotic enteritis, a disease that has emerged due to the removal of antibiotics in animal feedstuffs. Here we present the crystal structure of the pore form of NetB solved to 3.9 Å. The heptameric assembly shares structural homology to the staphylococcal α-hemolysin. However, the rim domain, a region that is thought to interact with the target cell membrane, shows sequence and structural divergence leading to the alteration of a phosphocholine binding pocket found in the staphylococcal toxins. Consistent with the structure we show that NetB does not bind phosphocholine efficiently but instead interacts directly with cholesterol leading to enhanced oligomerization and pore formation. Finally we have identified conserved and non-conserved amino acid positions within the rim loops that significantly affect binding and toxicity of NetB. These findings present new insights into the mode of action of these pore-forming toxins, enabling the design of more effective control measures against necrotic enteritis and providing potential new tools to the field of bionanotechnology.

Indexed as

AnimalsBacterial ToxinsCell Line, TumorCell ShapeChickensCholesterolClostridium perfringensCrystallography, X-RayModels, MolecularMutant ProteinsMutationPhospholipidsProtein BindingProtein MultimerizationProtein Structure, TertiarySolubilityBacterial ToxinsCholesterolMutant ProteinsNE B-like toxin, Clostridium perfringensPhospholipids

Identifiers

PMID23239883
PMCPMC3561570
OpenAlexW2092545763

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.